More than 300 homologs were found in PanDaTox collection
for query gene SO_3890 on replicon NC_004347
Organism: Shewanella oneidensis MR-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009052  Sbal_3564  methyl-accepting chemotaxis sensory transducer  82.23 
 
 
529 aa  859    Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0739  methyl-accepting chemotaxis sensory transducer  89.98 
 
 
529 aa  947    Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00129252 
 
 
-
 
NC_011663  Sbal223_0820  methyl-accepting chemotaxis sensory transducer  82.61 
 
 
529 aa  862    Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00000000219782 
 
 
-
 
NC_004347  SO_3890  methyl-accepting chemotaxis protein  100 
 
 
529 aa  1078    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0827  methyl-accepting chemotaxis sensory transducer  82.61 
 
 
529 aa  862    Shewanella baltica OS195  Bacteria  normal  normal  0.456094 
 
 
-
 
NC_009665  Shew185_0795  methyl-accepting chemotaxis sensory transducer  82.42 
 
 
529 aa  860    Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0776  methyl-accepting chemotaxis sensory transducer  81.67 
 
 
526 aa  791    Shewanella putrefaciens CN-32  Bacteria  normal  0.534221  n/a   
 
 
-
 
NC_008321  Shewmr4_3223  methyl-accepting chemotaxis sensory transducer  88.85 
 
 
529 aa  940    Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000000784984 
 
 
-
 
NC_008322  Shewmr7_0766  methyl-accepting chemotaxis sensory transducer  88.85 
 
 
529 aa  937    Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00205391 
 
 
-
 
NC_008700  Sama_0550  putative methyl-accepting chemotaxis sensory transducer  58.63 
 
 
518 aa  524  1e-147  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0126879 
 
 
-
 
NC_009092  Shew_0492  methyl-accepting chemotaxis sensory transducer  39.66 
 
 
530 aa  363  3e-99  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3058  methyl-accepting chemotaxis sensory transducer  30.45 
 
 
518 aa  246  9e-64  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1021  methyl-accepting chemotaxis sensory transducer  29.04 
 
 
518 aa  222  9.999999999999999e-57  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  37.16 
 
 
572 aa  211  2e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0039  methyl-accepting chemotaxis sensory transducer  29.69 
 
 
515 aa  210  7e-53  Geobacter sp. M21  Bacteria  n/a    normal  0.0381098 
 
 
-
 
NC_011146  Gbem_0040  methyl-accepting chemotaxis sensory transducer  28.71 
 
 
515 aa  208  1e-52  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  36.39 
 
 
640 aa  207  5e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  36.39 
 
 
640 aa  207  5e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  37.69 
 
 
638 aa  206  1e-51  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
638 aa  205  2e-51  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  37.08 
 
 
638 aa  204  5e-51  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_007519  Dde_2814  methyl-accepting chemotaxis sensory transducer  36.3 
 
 
722 aa  203  5e-51  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  37.46 
 
 
642 aa  202  1.9999999999999998e-50  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  37.32 
 
 
674 aa  201  1.9999999999999998e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.78 
 
 
712 aa  201  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  38.06 
 
 
712 aa  201  3e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_011769  DvMF_1698  methyl-accepting chemotaxis sensory transducer  32.66 
 
 
963 aa  201  3e-50  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
541 aa  201  3e-50  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  37.5 
 
 
652 aa  200  3.9999999999999996e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
647 aa  200  6e-50  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1672  methyl-accepting chemotaxis sensory transducer  34.67 
 
 
544 aa  199  9e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  36.06 
 
 
642 aa  198  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_008751  Dvul_0230  methyl-accepting chemotaxis sensory transducer  32.75 
 
 
963 aa  197  3e-49  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2526  methyl-accepting chemotaxis protein  37.39 
 
 
559 aa  196  7e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.591236  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  35.53 
 
 
629 aa  196  8.000000000000001e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  38.91 
 
 
638 aa  196  9e-49  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
716 aa  196  9e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  36.17 
 
 
638 aa  195  2e-48  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  35.92 
 
 
543 aa  195  2e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  35.67 
 
 
619 aa  194  4e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  36.06 
 
 
650 aa  194  5e-48  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_007519  Dde_0434  methyl-accepting chemotaxis sensory transducer  32.13 
 
 
579 aa  194  5e-48  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  38.04 
 
 
645 aa  193  6e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  38.41 
 
 
646 aa  193  6e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  36.54 
 
 
634 aa  192  1e-47  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  36.16 
 
 
681 aa  192  1e-47  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  37.15 
 
 
739 aa  192  1e-47  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  36.74 
 
 
713 aa  192  1e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.94 
 
 
523 aa  192  1e-47  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  36.1 
 
 
638 aa  192  1e-47  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  37.26 
 
 
647 aa  191  2e-47  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  43.49 
 
 
541 aa  191  2e-47  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  34.57 
 
 
564 aa  191  2.9999999999999997e-47  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1637  methyl-accepting chemotaxis sensory transducer  36.31 
 
 
538 aa  191  2.9999999999999997e-47  Pseudomonas putida W619  Bacteria  normal  0.662156  normal 
 
 
-
 
NC_009512  Pput_3621  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
555 aa  191  4e-47  Pseudomonas putida F1  Bacteria  normal  normal  0.30858 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  36.06 
 
 
633 aa  190  4e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_007492  Pfl01_0657  chemotaxis sensory transducer, Cache sensor  33.99 
 
 
648 aa  190  4e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.511779  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  37.18 
 
 
773 aa  190  5e-47  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_002947  PP_2120  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
555 aa  189  7e-47  Pseudomonas putida KT2440  Bacteria  normal  normal  0.236845 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  40.07 
 
 
541 aa  189  8e-47  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  37.59 
 
 
647 aa  189  1e-46  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  33.52 
 
 
542 aa  189  1e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  32.47 
 
 
541 aa  189  1e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_008740  Maqu_2111  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
572 aa  189  1e-46  Marinobacter aquaeolei VT8  Bacteria  normal  0.138456  n/a   
 
 
-
 
NC_009439  Pmen_1210  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
540 aa  188  2e-46  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.289047 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
540 aa  188  2e-46  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  37.34 
 
 
638 aa  188  2e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010322  PputGB1_1660  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
538 aa  188  2e-46  Pseudomonas putida GB-1  Bacteria  normal  normal  0.170942 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  37.21 
 
 
645 aa  187  3e-46  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  38.73 
 
 
411 aa  187  4e-46  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  38.29 
 
 
630 aa  187  4e-46  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  36.49 
 
 
575 aa  187  6e-46  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_011138  MADE_00464  methyl-accepting chemotaxis protein  35.87 
 
 
636 aa  186  7e-46  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.62 
 
 
627 aa  186  8e-46  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  35.45 
 
 
643 aa  186  9e-46  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_002939  GSU2942  methyl-accepting chemotaxis protein  33.8 
 
 
544 aa  186  1.0000000000000001e-45  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  41 
 
 
624 aa  186  1.0000000000000001e-45  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  36.21 
 
 
425 aa  186  1.0000000000000001e-45  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  32.78 
 
 
573 aa  185  2.0000000000000003e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_004578  PSPTO_3580  methyl-accepting chemotaxis protein  33.9 
 
 
546 aa  184  2.0000000000000003e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3477  putative methyl-accepting chemotaxis protein  36.04 
 
 
622 aa  185  2.0000000000000003e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000522984 
 
 
-
 
NC_009784  VIBHAR_05646  histidine kinase  33.43 
 
 
482 aa  184  2.0000000000000003e-45  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
552 aa  184  2.0000000000000003e-45  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_007520  Tcr_1999  methyl-accepting chemotaxis sensory transducer  31.4 
 
 
405 aa  185  2.0000000000000003e-45  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  34.51 
 
 
636 aa  184  2.0000000000000003e-45  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  34.19 
 
 
570 aa  184  3e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
552 aa  184  3e-45  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  37.05 
 
 
538 aa  184  3e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  32.45 
 
 
548 aa  184  3e-45  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
552 aa  184  3e-45  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  38.87 
 
 
676 aa  184  4.0000000000000006e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2301  methyl-accepting chemotaxis sensory transducer  34.81 
 
 
632 aa  183  5.0000000000000004e-45  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  33.24 
 
 
541 aa  183  5.0000000000000004e-45  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3770  aerotaxis receptor Aer  36.39 
 
 
521 aa  184  5.0000000000000004e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  33.62 
 
 
637 aa  184  5.0000000000000004e-45  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
639 aa  183  6e-45  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_007492  Pfl01_4317  chemotaxis sensory transducer  38.81 
 
 
540 aa  183  6e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.153995 
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  34.37 
 
 
497 aa  183  6e-45  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  33.89 
 
 
541 aa  183  7e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  33.99 
 
 
568 aa  182  1e-44  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>