| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0766 |
|---|
| Symbol | |
|---|
| ID | 4255839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 875222 |
|---|
| End bp | 876811 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638121377 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_736823 |
|---|
| Protein GI | 114046273 |
|---|
| COG category | [N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2703] Hemerythrin |
|---|
| TIGRFAM ID | [TIGR02481] hemerythrin-like metal-binding domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00205391 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACA TCAGTGTCAA CAAAGGCAGC ATGGGATATG GCATTATCTT TGCGCCCATG
ATCCTACTCT TATATCCGCT CTACTGTTTA GTGACGAGCG CGTACTGGGT GGCAACATTC
AGTTTAATTG CTCTTGCCGT AATTCTCTTT TTGAATATTA ACAAACTCAT CCGTAATTTA
AGACACTTAG AGCGTGCGGC TCATCACTTA GGTGAGGGGG ATTTAAGTTA TCAGCTCGAT
GAAAAAGATG CGGGTGTGTT TATTTCGGTG GTCCATAGCA TCAACCGCAT GGGGGAGGAT
GTCAGCCGCA CTATTCTATC CTTAGTCGAT ACCAGCGAGT GGATGAAGAA AGTCGCGACC
GATATTAAAG GGATCAGCGA ACAGGCCAAA CAGGGCGTGC TCGAGCAGGA GCGTCAAACC
GAGTTGGCCG CAACGGCAAT GACGCAGATG GTCTCCACCG TACAAGAAGT GTCACACAAT
GCTGCTACTA CGGCTCAAGC GGCCGATATT GCCCAAGGCT CGGCGAAACA CGGTGATGAG
TTAATTGGTA CTATCGTAAA TAAAATCAGC GATATGAAAT CGCAAATTCA TCACACTAAA
GGCGTTATCG AGCACCTCGC CGCCGATACC AATAGCATTA GTAGTATCAT TGAAACCATT
TCCCAAGTCG CGGAGCAAAC AAACCTATTG GCACTCAATG CGGCGATTGA GAGTGCGCGT
GCCGGTGAAC ATGGTCGTGG TTTTGCGGTC GTCGCCGATG AAGTGCGTAA CTTAGCTAAA
CGTACCTCAG AGGCCACCGC CGAAATTCAG CAGCAGATTA CCACGCTGCA AAAGGGCGCG
CAGCAGAGTG TGGAAGTGAT GCTCAAGAAT GTCACCATCG CCGACGAAAC CGCCGTGATG
GTTGATCAAG CTCATCAAGC TCTGGGGGAT ATAGTGACTC AGGTTGAGAG CATTACCGAT
ATGTCTCACC AAATCGCAAC GGCCTCGGAA GAACAGCATG CGGTTGCTGA GGAGATTAAC
AAAAATATCA GCGTAATGGC CGATCTCGCC CTAAAAAATG CACGCCATAC CAACCACACC
AACTTATCCA GTCTTAAGGT GTATAACATG TCGCAGGAAA TTGGCTCCCT GCTGCATCGA
TTCCAAGTCG ATGCCAAAAT GTTTAACTCT AACGAAGCCC AGAGCAAGTT ATTCGTAAAA
TGGGGGCCTG AGCTTGATAT CGGCATGCCG GAGATTAACC GTCAGCACCA ACGCTTAGTC
TCATTAATCA ATGAATTACA CCGGACCTTA AGTGAGGCAT ACGGGCTCGA GGCGATTAAA
CGCATCGTTC AAGGGCTGGT GGATTACACT GCGAACCATT TCTCCTATGA AGAAGAATTG
TTTGCGCGTT TTGGTTATCC ACAAACCGTA GCCCACAAAG AAAAACATGC TCAACTCGTT
AGTCAAGTGC TTGATTTTCA AAAGCGAGTC GCTAGAGGTG AAGATGTAGC CGATGAACTC
ATGGCATTTT TAAAAGCCTG GCTCGTCAAT CATATTCAAA AGAGCGATAA GGAATACACC
CAATTTTTAC TCGCCCATGG CGCCGAATAA
|
|---|
| Protein sequence | MADISVNKGS MGYGIIFAPM ILLLYPLYCL VTSAYWVATF SLIALAVILF LNINKLIRNL
RHLERAAHHL GEGDLSYQLD EKDAGVFISV VHSINRMGED VSRTILSLVD TSEWMKKVAT
DIKGISEQAK QGVLEQERQT ELAATAMTQM VSTVQEVSHN AATTAQAADI AQGSAKHGDE
LIGTIVNKIS DMKSQIHHTK GVIEHLAADT NSISSIIETI SQVAEQTNLL ALNAAIESAR
AGEHGRGFAV VADEVRNLAK RTSEATAEIQ QQITTLQKGA QQSVEVMLKN VTIADETAVM
VDQAHQALGD IVTQVESITD MSHQIATASE EQHAVAEEIN KNISVMADLA LKNARHTNHT
NLSSLKVYNM SQEIGSLLHR FQVDAKMFNS NEAQSKLFVK WGPELDIGMP EINRQHQRLV
SLINELHRTL SEAYGLEAIK RIVQGLVDYT ANHFSYEEEL FARFGYPQTV AHKEKHAQLV
SQVLDFQKRV ARGEDVADEL MAFLKAWLVN HIQKSDKEYT QFLLAHGAE
|
|---|
| |