| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sbal223_0820 |
|---|
| Symbol | |
|---|
| ID | 7088053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS223 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011663 |
|---|
| Strand | + |
|---|
| Start bp | 947610 |
|---|
| End bp | 949199 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 643459731 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_002356761 |
|---|
| Protein GI | 217972010 |
|---|
| COG category | [N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2703] Hemerythrin |
|---|
| TIGRFAM ID | [TIGR02481] hemerythrin-like metal-binding domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000000219782 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTA ATAAAAGTCG CAAGGATTCA ATGGGATATA ATTCTATCTT TGCGCCACTG
CTGTTGCTGA TTTATCCACT CTATTGTTTA GTGATCACTG GGCACTTTGT CGCCATCCTG
TGTTTAAGCG CGCTCGCCGG CATTTTAATG TTCAACATCA ATAAATTAAT TCGCAATTTA
AGACAGCTTG AACGTGCCGC CCATCATTTA GGCGAGGGAG ATTTAAGCTA TCAATTAGAA
GAGAAAGATG CGGGCGTGTT CATTAAGGTC GTGCATAGCA TCAACCGCAT GGGCGAGGAT
GTCAGCCGCA CGATTTTATC TTTGTCTGAT ACCTGTGAAG GGATGAAAAA AGTGGCCTCG
GATATCAAGG TCATCAGTGA ACAGGCAAAA CAAGGCGTGC TAGAGCAAGA GCATCAAACG
GAACTGGCCG CCAGTGCGAT GACGCAAATG GTTTCAAGCG TGCAAGCGGT GTCGCAAAAT
GCAATCAGTG CGGCCAAAGC TGCCGATATA GCTCAAAGTT CTGCCAAGCA TGGCGACCAA
ATCATGAATG GCATAGTGAC TAAAATTGGC GCTATGTCAG CACAGATCCA TGATACTCGA
ACCGTGATTG AGCACTTGGC CGCCGACAGT AATAATATCA GTAGCATTAT CGAAACGATT
TCGCAGGTGG CTGAGCAAAC CAACTTACTC GCCTTAAACG CCGCCATTGA AAGTGCTAGA
GCCGGTGAGC ATGGTCGCGG CTTTGCCGTT GTCGCCGATG AAGTGCGTAA TCTTGCGAAA
CGGACATCTG AAGCCACGGT TGAAATCCAA CAACAAATCG CCGCATTACA AAAAGGTGCA
CAACATGGCG TTGAAGTCAT GTTGAAAAAC GTGGTCATTG CCGACGAAAC CGCTGAGATG
GTGAATCAAG CCCACAGCGC GCTCGGACAA ATCGTCACGC AGGTAGAGAC CATTACCGAT
ATGTCCCATC AAATCGCCAC GGCATCGGGG CAACAACACA CAGTTGCTGA AGAAATTAAT
AAAAATATCA CAGTGATGGC AGAGCTCGCG CTGAGTAATG CGTCCCACAC CAACAACACT
AACTTATCGA GTTTGAAAGT GTATAACATG TCGCAGGAAA TCGGCTCCTT GCTGCATCGA
TTCCATGTGA ATGCGGCATT CTTTAACTCT AGTCAGGCAC AAAATAAACT GTTTGTGAAA
TGGGGACCTG AGTTAGACAT AGGGATGCCA GAGATCAATC GTCAACATCA ACGATTAGTG
TCGCTGATCA ATGAACTGCA TCGCACATTA AACGAAGAGT ATGGACTCGA AGCCATCAAA
CGTATCGTGC AAGGGCTGGT GGATTACACC GCCAATCACT TTGCCTATGA AGAAGAGCTC
TTTGCCCGTT TTGGCTACCC ACAAACCGAC AGTCATAAGG AAAAGCACGG CAAGTTAGTC
GGGCAAGTAC TTGATTTTCA AAAGCGGGTT GTAAAAGGGG AAGATGTTGC CGACGAATTA
ATGACTTTCT TGAAGGCTTG GCTGGTTAAC CATATCCAAA AAAGTGATAA AGAATATACC
GCCTTTTTGT TATCCCATGG CGCAGAATAA
|
|---|
| Protein sequence | MDSNKSRKDS MGYNSIFAPL LLLIYPLYCL VITGHFVAIL CLSALAGILM FNINKLIRNL
RQLERAAHHL GEGDLSYQLE EKDAGVFIKV VHSINRMGED VSRTILSLSD TCEGMKKVAS
DIKVISEQAK QGVLEQEHQT ELAASAMTQM VSSVQAVSQN AISAAKAADI AQSSAKHGDQ
IMNGIVTKIG AMSAQIHDTR TVIEHLAADS NNISSIIETI SQVAEQTNLL ALNAAIESAR
AGEHGRGFAV VADEVRNLAK RTSEATVEIQ QQIAALQKGA QHGVEVMLKN VVIADETAEM
VNQAHSALGQ IVTQVETITD MSHQIATASG QQHTVAEEIN KNITVMAELA LSNASHTNNT
NLSSLKVYNM SQEIGSLLHR FHVNAAFFNS SQAQNKLFVK WGPELDIGMP EINRQHQRLV
SLINELHRTL NEEYGLEAIK RIVQGLVDYT ANHFAYEEEL FARFGYPQTD SHKEKHGKLV
GQVLDFQKRV VKGEDVADEL MTFLKAWLVN HIQKSDKEYT AFLLSHGAE
|
|---|
| |