More than 300 homologs were found in PanDaTox collection
for query gene Sama_0550 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_0550  putative methyl-accepting chemotaxis sensory transducer  100 
 
 
518 aa  1041    Shewanella amazonensis SB2B  Bacteria  normal  normal  0.0126879 
 
 
-
 
NC_008577  Shewana3_0739  methyl-accepting chemotaxis sensory transducer  58.74 
 
 
529 aa  559  1e-158  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.00129252 
 
 
-
 
NC_008321  Shewmr4_3223  methyl-accepting chemotaxis sensory transducer  58.55 
 
 
529 aa  555  1e-157  Shewanella sp. MR-4  Bacteria  normal  hitchhiker  0.000000784984 
 
 
-
 
NC_011663  Sbal223_0820  methyl-accepting chemotaxis sensory transducer  59.53 
 
 
529 aa  551  1e-156  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00000000219782 
 
 
-
 
NC_009052  Sbal_3564  methyl-accepting chemotaxis sensory transducer  59.53 
 
 
529 aa  551  1e-156  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0776  methyl-accepting chemotaxis sensory transducer  59.15 
 
 
526 aa  552  1e-156  Shewanella putrefaciens CN-32  Bacteria  normal  0.534221  n/a   
 
 
-
 
NC_009997  Sbal195_0827  methyl-accepting chemotaxis sensory transducer  59.53 
 
 
529 aa  551  1e-156  Shewanella baltica OS195  Bacteria  normal  normal  0.456094 
 
 
-
 
NC_008322  Shewmr7_0766  methyl-accepting chemotaxis sensory transducer  58.15 
 
 
529 aa  552  1e-156  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00205391 
 
 
-
 
NC_004347  SO_3890  methyl-accepting chemotaxis protein  58.52 
 
 
529 aa  550  1e-155  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_0795  methyl-accepting chemotaxis sensory transducer  59.53 
 
 
529 aa  551  1e-155  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0492  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
530 aa  348  2e-94  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3058  methyl-accepting chemotaxis sensory transducer  33.2 
 
 
518 aa  236  1.0000000000000001e-60  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1021  methyl-accepting chemotaxis sensory transducer  31.71 
 
 
518 aa  231  3e-59  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0434  methyl-accepting chemotaxis sensory transducer  32.25 
 
 
579 aa  216  5.9999999999999996e-55  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0039  methyl-accepting chemotaxis sensory transducer  28.6 
 
 
515 aa  212  1e-53  Geobacter sp. M21  Bacteria  n/a    normal  0.0381098 
 
 
-
 
NC_007519  Dde_2814  methyl-accepting chemotaxis sensory transducer  35.24 
 
 
722 aa  209  8e-53  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0040  methyl-accepting chemotaxis sensory transducer  28.4 
 
 
515 aa  208  1e-52  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1698  methyl-accepting chemotaxis sensory transducer  31.65 
 
 
963 aa  205  2e-51  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008751  Dvul_2798  methyl-accepting chemotaxis sensory transducer  36.29 
 
 
689 aa  201  3e-50  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.803852 
 
 
-
 
NC_008751  Dvul_0230  methyl-accepting chemotaxis sensory transducer  30.82 
 
 
963 aa  197  5.000000000000001e-49  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  39.57 
 
 
572 aa  194  2e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  38.22 
 
 
681 aa  194  5e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  36.45 
 
 
543 aa  190  4e-47  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  38.22 
 
 
642 aa  190  4e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
640 aa  190  4e-47  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  39.3 
 
 
650 aa  190  5.999999999999999e-47  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  37.58 
 
 
676 aa  189  8e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  35.9 
 
 
640 aa  189  9e-47  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  37.66 
 
 
647 aa  189  1e-46  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  35.96 
 
 
642 aa  188  2e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  34.73 
 
 
552 aa  187  4e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_011883  Ddes_1895  methyl-accepting chemotaxis sensory transducer  31.67 
 
 
559 aa  186  9e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.191486  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  34.68 
 
 
541 aa  186  9e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  38.1 
 
 
634 aa  186  1.0000000000000001e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.07 
 
 
712 aa  185  2.0000000000000003e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  37.66 
 
 
646 aa  185  2.0000000000000003e-45  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  37.54 
 
 
638 aa  184  3e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  35.33 
 
 
629 aa  184  5.0000000000000004e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
564 aa  183  6e-45  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  37.03 
 
 
647 aa  183  8.000000000000001e-45  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  36.41 
 
 
739 aa  182  1e-44  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_009997  Sbal195_0931  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
541 aa  182  1e-44  Shewanella baltica OS195  Bacteria  normal  normal  0.476721 
 
 
-
 
NC_011663  Sbal223_0921  methyl-accepting chemotaxis sensory transducer  35.99 
 
 
541 aa  181  2e-44  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  37.03 
 
 
716 aa  182  2e-44  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  35.99 
 
 
541 aa  181  2e-44  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  36.49 
 
 
712 aa  181  2.9999999999999997e-44  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  36.41 
 
 
552 aa  181  2.9999999999999997e-44  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  36.41 
 
 
552 aa  181  2.9999999999999997e-44  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  38.87 
 
 
652 aa  181  2.9999999999999997e-44  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
541 aa  180  4.999999999999999e-44  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  34.86 
 
 
634 aa  179  8e-44  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  37.03 
 
 
638 aa  179  8e-44  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  36.06 
 
 
674 aa  179  1e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  35.92 
 
 
713 aa  179  1e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  35.67 
 
 
541 aa  179  1e-43  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1006  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
573 aa  179  1e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  35.65 
 
 
634 aa  178  2e-43  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  37.03 
 
 
638 aa  178  2e-43  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  37.03 
 
 
638 aa  178  2e-43  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  35.34 
 
 
620 aa  178  2e-43  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  36.71 
 
 
638 aa  178  2e-43  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  34.71 
 
 
541 aa  179  2e-43  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  36.01 
 
 
541 aa  177  3e-43  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  34.44 
 
 
425 aa  177  3e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  34.66 
 
 
619 aa  177  4e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  34.38 
 
 
638 aa  176  6e-43  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  34.66 
 
 
633 aa  176  8e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  34.07 
 
 
482 aa  176  8e-43  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  36.39 
 
 
647 aa  176  9.999999999999999e-43  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_008345  Sfri_3082  methyl-accepting chemotaxis sensory transducer  35.35 
 
 
673 aa  176  9.999999999999999e-43  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
634 aa  175  1.9999999999999998e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5160  methyl-accepting chemotaxis protein  36.39 
 
 
647 aa  174  1.9999999999999998e-42  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.391343  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  34.36 
 
 
636 aa  175  1.9999999999999998e-42  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.72 
 
 
630 aa  174  2.9999999999999996e-42  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_007492  Pfl01_1630  chemotaxis sensory transducer  34.81 
 
 
541 aa  174  2.9999999999999996e-42  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0250136 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  37.46 
 
 
647 aa  174  2.9999999999999996e-42  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  33.91 
 
 
637 aa  174  2.9999999999999996e-42  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  34.82 
 
 
639 aa  174  5e-42  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  38.77 
 
 
541 aa  173  5.999999999999999e-42  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_007005  Psyr_0379  histidine kinase, HAMP region: chemotaxis sensory transducer  35.74 
 
 
647 aa  173  6.999999999999999e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.454626  normal 
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  34.47 
 
 
553 aa  173  6.999999999999999e-42  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  36.86 
 
 
636 aa  173  7.999999999999999e-42  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  35.9 
 
 
558 aa  172  9e-42  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  37.68 
 
 
625 aa  173  9e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
NC_004578  PSPTO_3580  methyl-accepting chemotaxis protein  35.85 
 
 
546 aa  172  1e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  37.27 
 
 
541 aa  172  1e-41  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  36.08 
 
 
541 aa  172  1e-41  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_002443  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  34.72 
 
 
541 aa  172  1e-41  Vibrio sp. Ex25  Bacteria  unclonable  0.00000057049  n/a   
 
 
-
 
NC_010322  PputGB1_4653  methyl-accepting chemotaxis sensory transducer  38.17 
 
 
639 aa  172  1e-41  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4658  methyl-accepting chemotaxis sensory transducer  38.17 
 
 
639 aa  172  2e-41  Pseudomonas putida KT2440  Bacteria  normal  0.415489  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  35.46 
 
 
568 aa  171  2e-41  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  38.27 
 
 
629 aa  172  2e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  35.35 
 
 
542 aa  171  2e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  33.68 
 
 
638 aa  171  2e-41  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_010501  PputW619_4403  methyl-accepting chemotaxis sensory transducer  37.46 
 
 
670 aa  171  2e-41  Pseudomonas putida W619  Bacteria  normal  0.604884  normal 
 
 
-
 
NC_009439  Pmen_1210  methyl-accepting chemotaxis sensory transducer  34.16 
 
 
540 aa  171  2e-41  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.289047 
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  35.56 
 
 
624 aa  171  3e-41  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3322  methyl-accepting chemotaxis sensory transducer  34.71 
 
 
539 aa  171  3e-41  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.910778 
 
 
-
 
NC_013889  TK90_0580  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.85 
 
 
521 aa  171  3e-41  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0413099 
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  34.63 
 
 
570 aa  171  4e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
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