| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0550 |
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| Symbol | |
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| ID | 4602805 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 676060 |
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| End bp | 677616 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779886 |
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| Product | putative methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_926430 |
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| Protein GI | 119773690 |
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| COG category | [N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein
[COG2703] Hemerythrin |
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| TIGRFAM ID | [TIGR02481] hemerythrin-like metal-binding domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0126879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTTG AAAACAAGAT GTTCCAACGA CTGGGCTGGC TGTTGCTGTT GGTTGTATTG
GTGCTGTTGT TGACCAAATC CCTGTGGCTT GAAGCCATGG TGCTGCTGCT CGCGGCAGTT
ATCATTGGCA CAGGCCTTAT GGGGCAGGCC AAAGCCCTGG CGGGTTTGGA GAGCGGGGTA
GCCAACCTTG CCGACGGTGA TTTGACACAG AGATTTGATG GTCATGTCAG TGATAACTAT
GCGAAGGTCG CCAAAGGGTT GCGGCGCATG AGCGAAGATG TGACCCGGAC CGTGTCGGGG
CTTTCGGATA CCAGCGAGGC GATGAATCAG GTTGCCAGAG AGCTGAAGTC AGTCAGTGAG
CTTGCTACCT TGGGCGTGGC CTCGCAGAAA CAGCGTACCG AAGAGGCAGC AGCCTCCATG
GCGCAAATGG TGCACACGGT GCAGGATATT TCTGCCAGTG CTGCACGTGT TGCGGCATCG
GTCGACGACA CCATGGGGCG CGCCGAACAT GGTGGTCGGC TGGTCAATCA GGCGGTGGGT
CGCATCAATT CGATGGCCGA GCAAATCAGT CAGAGTGAAA TTGTTATCGA ACAGCTGGCG
CAGGATGCTG CCAGCATCAG CAGCATTATC GACACCATTT CTCAGGTTGC TGAGCAAACC
AACTTACTGG CACTTAATGC AGCTATTGAG AGTGCCAGAG CCGGCGAACA CGGTCGCGGC
TTTGCTGTGG TGGCAGATGA AGTGCGCAAT CTGGCCAAAC GTACCTCGGA AGCGACGGTG
GAAATCCAGC AGCAAATACA GGCGCTGCAA GCAGGAAGCC GTAACGGTGT GGCCGTGATG
CATGCCTCTG TGGCGCTTGC GGAAGAAACC AGGGGACTGG TGAGTCAGGC CAGTGAAGCG
CTCACTGTGA TAGTGACGCA GGTTGGCGAG ATAACCCAGA TGAGCCATCA AATCGCTGCT
GCGTCTGAAC ATCAGCAGCA AGTGGCCGAG CAAATCAACG AATCCATTGC CTCTATCTCC
CACCAGGCAA CCGAAAATGC CGCCAACACC AATCGCAACA ATCTCGCCAG TCTTAAACTT
TTCAACATGT CTCAGGAAAT TGGTTCCCTG CTGCACAGAT TTCATGTGGA CAAGAGTCGT
ATTCGCCATG AGAACGCCTT TGTCAGTTGG GGACCATCCC TCGACATTGG TATGGCCGAA
GTCAATCGCC AACATCAGCG ACTCATTACC CTGATAAACG AGCTGCACAG GGCCATCAAC
GAAGGTTATG GTCTGGCGGC AATCAAGCGT ATTGTGCAGG GGCTGGTGGA CTACACCGCC
AATCATTTCA GTTACGAAGA AGAGTTGTTC GCGCGCTTTG ATTACCCCCA GAGTCAGGAC
CACGAAGATG AGCACAAGAA ATTGGTCACT CAAGTCCTCG ACTTTCAGCG TCGGGTGGGA
CGGGGAGAAA ACGTCTCGGA TGAGCTGATG GCGTTTCTCA AGGCCTGGCT TATCAACCAC
ATTCAGGGCA GCGATAAGCA ATATGCCCCA TATCTGATTG CCAATGGGGC TGACTAA
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| Protein sequence | MLFENKMFQR LGWLLLLVVL VLLLTKSLWL EAMVLLLAAV IIGTGLMGQA KALAGLESGV
ANLADGDLTQ RFDGHVSDNY AKVAKGLRRM SEDVTRTVSG LSDTSEAMNQ VARELKSVSE
LATLGVASQK QRTEEAAASM AQMVHTVQDI SASAARVAAS VDDTMGRAEH GGRLVNQAVG
RINSMAEQIS QSEIVIEQLA QDAASISSII DTISQVAEQT NLLALNAAIE SARAGEHGRG
FAVVADEVRN LAKRTSEATV EIQQQIQALQ AGSRNGVAVM HASVALAEET RGLVSQASEA
LTVIVTQVGE ITQMSHQIAA ASEHQQQVAE QINESIASIS HQATENAANT NRNNLASLKL
FNMSQEIGSL LHRFHVDKSR IRHENAFVSW GPSLDIGMAE VNRQHQRLIT LINELHRAIN
EGYGLAAIKR IVQGLVDYTA NHFSYEEELF ARFDYPQSQD HEDEHKKLVT QVLDFQRRVG
RGENVSDELM AFLKAWLINH IQGSDKQYAP YLIANGAD
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