| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1660 |
|---|
| Symbol | |
|---|
| ID | 5869439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1879165 |
|---|
| End bp | 1880781 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546776 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001667899 |
|---|
| Protein GI | 167032668 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.170942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTA AATCCCTCAG AGTGCAAATT CTCTCGCTGC TCGGCGGCAG CGTGGTGGCG
ATGCTGCTGA TCGCCCTGGT GTGTTTCCAG TTTCTGTCGT CCAGCGTGCG TGGTTACGCC
GAGTTGGTGG ACGGGCCGCT GCGGGCCTCG CAATTGATTG ACGAAGCCAA CCTGCAGTTC
AAGATCCAGG TGCAGGAATG GAAGAACGTG CTGCTGCGCG GGCGCCAACC GGCAGAGATG
GACAAGTACT GGCAGCAGTT CCAGGCCCGC GAGCAGCAGG TGCAACAATT GCTCGGGCAA
CTAATCGACA GCAGCGACGC CAGGCTCAAG GAGCCACTAC AGCAATTGCG CGACAGCCAC
CGCCAGCTGG GCCAGGCCTA TGCGCAGGGG CGGCAGGCCT TCCTTGCCGC AGGTGGCGAC
CCGGTAGCAG GCGACCAGGC GGTGAAGGGC GTGGATCGCG CCGCCAGTGA GCAGATGAGC
CAACTGGTCG AGCAACTGCG TGCCGATGCC CGCCAGCGTG CGATGAGCAT CAGCGCCAGC
GCCGAGCGCA CGGTATGGCT GGGCCTGCTG GTGATGCTGG CTTCTGCGGT GCTGGTGGGG
CTGCTTAGCC TGTGGTTGGT CAATCGCAGC CTGATCGAGC CGATCCGCCA GTTGATCGAG
TATGTTGCGC AACTCAGCCA AGGCCGCTTT GCCGCCCGGG TCGACAGCCG CCGTGAGGAC
GAACTGGGGC GGCTGGCGCG GGCGGCCAAC ACCCTGCGCG ATTTCCTGGC CGACACGGTT
GGCCGGTTGC AGGACAACGC GCAGGAGCTG GAAGGCGCCA GTGGCCAGTT GCGCAGTATT
GCCGGCGACA TGGCTCGCGG TACTCATGAC CAGTTCCAGC GTACCGACCA GGTGGCGACG
GCCATGCACG AGATGTCCGC CACCGCACAG GAGGTGGCTC GCCACGCCGC CGAGGCAGCC
CGTGCAGCGG ATGACGCCGA CCACAGCGCC CAGGCGGGCG AGCAGGTGAT GCAGCAGACC
ATCGACATCA TCGGTGTGGT CAACCGTGAA ATCGCTGGCA CGGCGTCGGT GATCCGCGAT
CTGGAGCATG ACAGCACGCG CATTGGCAAA GTGCTGGAAG TGATTCGTGG CATTGCCGAG
CAAACCAACC TGCTGGCGCT CAACGCGGCC ATCGAGGCGG CCCGTGCTGG TGAAGCCGGG
CGCGGCTTTG CGGTGGTCGC CGATGAGGTG CGCAGCCTGG CCCAGCGCAC GGCGGCGTCG
ATTGCCGAAA TCAACCAGAT CATCGAAGCG GTACAGTCTG GGGCGGTGGA GGCGGTGAAG
GCCATCGAAA GCGGCCAGCA GCGAAGCCAG GAAGGGGCTG AACAGGTCGA GCAGGCCGGG
CAGATGCTGC AACGTATCAC CCAGGCTGTG GAGGCGATAC GCGATATGAA CCGGCAGATC
GCCACAGCAG CTGAAGAGCA GACCAGCGTA GCCGACGATA TCTCGCGCAA CCTGATCGAG
ATTACCCGCA TTGCCACGGC CAACCAGGAA GCGGTGCAGC ATACCGAGCA GGCGGGGCAT
CGCCTGCATG GTTTGTCGGG GCAACTGGGC GAAGTCACCT CGCGCCTGAG CGCCTGA
|
|---|
| Protein sequence | MLRKSLRVQI LSLLGGSVVA MLLIALVCFQ FLSSSVRGYA ELVDGPLRAS QLIDEANLQF
KIQVQEWKNV LLRGRQPAEM DKYWQQFQAR EQQVQQLLGQ LIDSSDARLK EPLQQLRDSH
RQLGQAYAQG RQAFLAAGGD PVAGDQAVKG VDRAASEQMS QLVEQLRADA RQRAMSISAS
AERTVWLGLL VMLASAVLVG LLSLWLVNRS LIEPIRQLIE YVAQLSQGRF AARVDSRRED
ELGRLARAAN TLRDFLADTV GRLQDNAQEL EGASGQLRSI AGDMARGTHD QFQRTDQVAT
AMHEMSATAQ EVARHAAEAA RAADDADHSA QAGEQVMQQT IDIIGVVNRE IAGTASVIRD
LEHDSTRIGK VLEVIRGIAE QTNLLALNAA IEAARAGEAG RGFAVVADEV RSLAQRTAAS
IAEINQIIEA VQSGAVEAVK AIESGQQRSQ EGAEQVEQAG QMLQRITQAV EAIRDMNRQI
ATAAEEQTSV ADDISRNLIE ITRIATANQE AVQHTEQAGH RLHGLSGQLG EVTSRLSA
|
|---|
| |