More than 300 homologs were found in PanDaTox collection
for query gene Rpal_2687 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_2687  binding-protein-dependent transport systems inner membrane component  100 
 
 
342 aa  666    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3868  binding-protein-dependent transport systems inner membrane component  62.3 
 
 
360 aa  368  1e-101  Variovorax paradoxus S110  Bacteria  normal  0.753162  n/a   
 
 
-
 
NC_009720  Xaut_2776  binding-protein-dependent transport systems inner membrane component  64.71 
 
 
352 aa  363  3e-99  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2672  binding-protein-dependent transport systems inner membrane component  68.03 
 
 
346 aa  358  7e-98  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010678  Rpic_4458  binding-protein-dependent transport systems inner membrane component  68.51 
 
 
345 aa  357  1.9999999999999998e-97  Ralstonia pickettii 12J  Bacteria  normal  0.0470416  normal  0.49714 
 
 
-
 
NC_011757  Mchl_1328  binding-protein-dependent transport systems inner membrane component  75 
 
 
332 aa  357  1.9999999999999998e-97  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.46412  normal  0.348688 
 
 
-
 
NC_012857  Rpic12D_4592  binding-protein-dependent transport systems inner membrane component  68.51 
 
 
345 aa  357  1.9999999999999998e-97  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1168  binding-protein-dependent transport systems inner membrane component  74.22 
 
 
332 aa  355  7.999999999999999e-97  Methylobacterium extorquens PA1  Bacteria  normal  0.811206  normal  0.0956624 
 
 
-
 
NC_010725  Mpop_4900  binding-protein-dependent transport systems inner membrane component  74.22 
 
 
333 aa  354  1e-96  Methylobacterium populi BJ001  Bacteria  normal  0.572728  normal 
 
 
-
 
NC_007973  Rmet_2220  binding-protein-dependent transport systems inner membrane component  60.19 
 
 
347 aa  351  1e-95  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00146165  normal  0.277213 
 
 
-
 
NC_008688  Pden_5011  binding-protein-dependent transport systems inner membrane component  56.68 
 
 
331 aa  350  3e-95  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4838  binding-protein-dependent transport systems inner membrane component  73.73 
 
 
334 aa  347  2e-94  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2058  binding-protein-dependent transport systems inner membrane component  63.32 
 
 
348 aa  346  3e-94  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.911629  normal 
 
 
-
 
NC_012560  Avin_31120  ABC transporter permease protein  65.62 
 
 
331 aa  345  8e-94  Azotobacter vinelandii DJ  Bacteria  normal  0.848336  n/a   
 
 
-
 
NC_010515  Bcenmc03_3264  binding-protein-dependent transport systems inner membrane component  61.64 
 
 
365 aa  344  1e-93  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.657095  normal 
 
 
-
 
NC_010552  BamMC406_4150  binding-protein-dependent transport systems inner membrane component  60.32 
 
 
363 aa  343  2.9999999999999997e-93  Burkholderia ambifaria MC40-6  Bacteria  normal  0.901317  normal  0.0679458 
 
 
-
 
NC_007953  Bxe_C0115  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  64.88 
 
 
352 aa  342  4e-93  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4113  binding-protein-dependent transport systems inner membrane component  70.33 
 
 
365 aa  342  8e-93  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.18641  n/a   
 
 
-
 
NC_008543  Bcen2424_4253  binding-protein-dependent transport systems inner membrane component  70.33 
 
 
365 aa  342  8e-93  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0124034  normal  0.0867755 
 
 
-
 
NC_007951  Bxe_A2163  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  61.23 
 
 
353 aa  341  9e-93  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3268  binding-protein-dependent transport systems inner membrane component  60.93 
 
 
331 aa  340  1e-92  Pseudomonas putida GB-1  Bacteria  normal  normal  0.478821 
 
 
-
 
NC_008391  Bamb_3677  binding-protein-dependent transport systems inner membrane component  61.59 
 
 
363 aa  340  2e-92  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.959373 
 
 
-
 
NC_009485  BBta_2517  putative alkanesulfonate ABC transporter, permease protein  65.74 
 
 
334 aa  337  1.9999999999999998e-91  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.562769 
 
 
-
 
NC_010086  Bmul_4337  binding-protein-dependent transport systems inner membrane component  69.11 
 
 
363 aa  336  2.9999999999999997e-91  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.638266 
 
 
-
 
NC_007511  Bcep18194_B1758  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  63.67 
 
 
364 aa  332  7.000000000000001e-90  Burkholderia sp. 383  Bacteria  normal  0.351017  normal  0.0158469 
 
 
-
 
NC_010002  Daci_5618  binding-protein-dependent transport systems inner membrane component  71.67 
 
 
351 aa  308  9e-83  Delftia acidovorans SPH-1  Bacteria  normal  0.447889  normal  0.316795 
 
 
-
 
NC_011365  Gdia_0858  binding-protein-dependent transport systems inner membrane component  61.29 
 
 
331 aa  281  1e-74  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.124749  normal 
 
 
-
 
NC_009485  BBta_2515  putative alkanesulfonate ABC transporter, permease protein  58.82 
 
 
337 aa  270  4e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.979433  normal 
 
 
-
 
NC_011004  Rpal_2903  binding-protein-dependent transport systems inner membrane component  54.33 
 
 
332 aa  268  7e-71  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1357  binding-protein-dependent transport systems inner membrane component  44.66 
 
 
338 aa  241  9e-63  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1918  binding-protein-dependent transport systems inner membrane component  42.28 
 
 
340 aa  206  6e-52  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1571  binding-protein-dependent transport systems inner membrane component  41.27 
 
 
355 aa  199  6e-50  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0527  binding-protein-dependent transport systems inner membrane component  35.07 
 
 
342 aa  189  4e-47  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2791  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
302 aa  130  4.0000000000000003e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_0163  binding-protein-dependent transport systems inner membrane component  30.17 
 
 
310 aa  113  4.0000000000000004e-24  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_014150  Bmur_0153  binding-protein-dependent transport systems inner membrane component  29.31 
 
 
277 aa  110  3e-23  Brachyspira murdochii DSM 12563  Bacteria  normal  0.589472  n/a   
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  29.43 
 
 
273 aa  109  9.000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_009943  Dole_0213  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
252 aa  108  1e-22  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
277 aa  107  4e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
283 aa  106  6e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
277 aa  105  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
278 aa  103  6e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  30.3 
 
 
250 aa  102  1e-20  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  31 
 
 
267 aa  102  1e-20  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  30.5 
 
 
271 aa  102  1e-20  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
277 aa  101  2e-20  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  31.62 
 
 
280 aa  101  2e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  34.18 
 
 
288 aa  100  3e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  31.09 
 
 
261 aa  100  4e-20  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  31.65 
 
 
272 aa  100  4e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_014211  Ndas_4937  binding-protein-dependent transport systems inner membrane component  31.76 
 
 
287 aa  100  5e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0773955  normal 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  32.16 
 
 
314 aa  99.8  7e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  26.82 
 
 
273 aa  99.4  8e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  26.82 
 
 
273 aa  99.4  8e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  31.28 
 
 
269 aa  99.4  9e-20  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  29 
 
 
273 aa  98.6  1e-19  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  30.18 
 
 
266 aa  99  1e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  28.09 
 
 
252 aa  98.6  1e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_011666  Msil_0772  binding-protein-dependent transport systems inner membrane component  31.22 
 
 
302 aa  97.8  2e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0528102 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
273 aa  98.6  2e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  32.74 
 
 
290 aa  97.4  3e-19  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  29.33 
 
 
274 aa  97.4  3e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_008554  Sfum_2216  binding-protein-dependent transport systems inner membrane component  27.85 
 
 
314 aa  97.4  3e-19  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.82677  normal  0.484673 
 
 
-
 
NC_008254  Meso_3540  binding-protein-dependent transport systems inner membrane component  32.27 
 
 
258 aa  97.1  4e-19  Chelativorans sp. BNC1  Bacteria  normal  0.853389  n/a   
 
 
-
 
NC_007604  Synpcc7942_1489  nitrate transport permease  30.61 
 
 
278 aa  96.7  5e-19  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  29 
 
 
273 aa  96.7  5e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  29 
 
 
273 aa  96.7  5e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  31.39 
 
 
263 aa  96.7  6e-19  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
265 aa  96.7  6e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.4 
 
 
273 aa  96.3  8e-19  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  32.75 
 
 
285 aa  95.9  9e-19  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_007604  Synpcc7942_1238  nitrate transport permease  27.4 
 
 
279 aa  95.1  2e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  26.29 
 
 
255 aa  94.7  2e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  30 
 
 
274 aa  94.4  2e-18  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1692  putative ABC transporter membrane protein  33.02 
 
 
281 aa  94.4  3e-18  Thermobifida fusca YX  Bacteria  hitchhiker  0.00465779  n/a   
 
 
-
 
NC_009485  BBta_2819  nitrate transport permease protein (nrtB)  28.68 
 
 
304 aa  94  4e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.233469  normal 
 
 
-
 
NC_009485  BBta_5985  putative ABC transporter (permease protein)  34.59 
 
 
255 aa  93.6  4e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.209656 
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
283 aa  93.6  5e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  28.14 
 
 
282 aa  93.6  5e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_014150  Bmur_0403  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
256 aa  93.2  6e-18  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4924  nitrate ABC transporter, inner membrane subunit  26.28 
 
 
280 aa  92.8  7e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.815767 
 
 
-
 
NC_012792  Vapar_5517  binding-protein-dependent transport systems inner membrane component  27.63 
 
 
256 aa  92.8  7e-18  Variovorax paradoxus S110  Bacteria  normal  0.16627  n/a   
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  27.85 
 
 
295 aa  92.8  8e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  32.6 
 
 
275 aa  92.8  8e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1455  binding-protein-dependent transport systems inner membrane component  34.2 
 
 
269 aa  92.8  8e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0865715  n/a   
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
291 aa  92.8  8e-18  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1975  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
291 aa  92.8  8e-18  Burkholderia cenocepacia HI2424  Bacteria  normal  0.690359  n/a   
 
 
-
 
NC_007406  Nwi_0673  binding-protein dependent transport system inner membrane protein  27.64 
 
 
275 aa  92.4  9e-18  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0666321  normal  0.331074 
 
 
-
 
NC_011726  PCC8801_3520  nitrate ABC transporter, inner membrane subunit  28.57 
 
 
280 aa  92.4  9e-18  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  27.8 
 
 
305 aa  92.4  1e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  27.64 
 
 
254 aa  92.4  1e-17  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  28.44 
 
 
306 aa  92  1e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_011988  Avi_5896  nitrate ABC transporter permease protein  28 
 
 
297 aa  92.4  1e-17  Agrobacterium vitis S4  Bacteria  normal  0.149001  n/a   
 
 
-
 
NC_013161  Cyan8802_2597  nitrate ABC transporter, inner membrane subunit  28.57 
 
 
280 aa  92  1e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  30.04 
 
 
260 aa  91.7  2e-17  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_009485  BBta_4879  putative ABC transporter, permease protein  30.71 
 
 
263 aa  91.3  2e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.132635 
 
 
-
 
NC_010511  M446_5130  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
272 aa  91.7  2e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.0470724 
 
 
-
 
NC_013739  Cwoe_4074  binding-protein-dependent transport systems inner membrane component  28.15 
 
 
281 aa  91.7  2e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.265456 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  27.03 
 
 
319 aa  91.7  2e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_007355  Mbar_A1031  sulfonate ABC transporter, permease protein  28.5 
 
 
261 aa  90.9  3e-17  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>