More than 300 homologs were found in PanDaTox collection
for query gene Cthe_1571 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_1571  binding-protein-dependent transport systems inner membrane component  100 
 
 
355 aa  704    Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1357  binding-protein-dependent transport systems inner membrane component  35.5 
 
 
338 aa  205  1e-51  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4113  binding-protein-dependent transport systems inner membrane component  39.31 
 
 
365 aa  197  3e-49  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.18641  n/a   
 
 
-
 
NC_008543  Bcen2424_4253  binding-protein-dependent transport systems inner membrane component  39.31 
 
 
365 aa  197  3e-49  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0124034  normal  0.0867755 
 
 
-
 
NC_010515  Bcenmc03_3264  binding-protein-dependent transport systems inner membrane component  39.84 
 
 
365 aa  193  3e-48  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.657095  normal 
 
 
-
 
NC_010552  BamMC406_4150  binding-protein-dependent transport systems inner membrane component  39 
 
 
363 aa  194  3e-48  Burkholderia ambifaria MC40-6  Bacteria  normal  0.901317  normal  0.0679458 
 
 
-
 
NC_008391  Bamb_3677  binding-protein-dependent transport systems inner membrane component  38.61 
 
 
363 aa  192  7e-48  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.959373 
 
 
-
 
NC_008688  Pden_5011  binding-protein-dependent transport systems inner membrane component  42.17 
 
 
331 aa  192  8e-48  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_3868  binding-protein-dependent transport systems inner membrane component  40.41 
 
 
360 aa  189  4e-47  Variovorax paradoxus S110  Bacteria  normal  0.753162  n/a   
 
 
-
 
NC_010086  Bmul_4337  binding-protein-dependent transport systems inner membrane component  38.22 
 
 
363 aa  188  1e-46  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.638266 
 
 
-
 
NC_007973  Rmet_2220  binding-protein-dependent transport systems inner membrane component  39.43 
 
 
347 aa  187  2e-46  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00146165  normal  0.277213 
 
 
-
 
NC_012560  Avin_31120  ABC transporter permease protein  42.11 
 
 
331 aa  186  6e-46  Azotobacter vinelandii DJ  Bacteria  normal  0.848336  n/a   
 
 
-
 
NC_009720  Xaut_2776  binding-protein-dependent transport systems inner membrane component  39.18 
 
 
352 aa  185  1.0000000000000001e-45  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1758  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  40.08 
 
 
364 aa  183  3e-45  Burkholderia sp. 383  Bacteria  normal  0.351017  normal  0.0158469 
 
 
-
 
NC_010581  Bind_2058  binding-protein-dependent transport systems inner membrane component  39.37 
 
 
348 aa  183  5.0000000000000004e-45  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.911629  normal 
 
 
-
 
NC_010322  PputGB1_3268  binding-protein-dependent transport systems inner membrane component  42.98 
 
 
331 aa  179  4.999999999999999e-44  Pseudomonas putida GB-1  Bacteria  normal  normal  0.478821 
 
 
-
 
NC_009485  BBta_2515  putative alkanesulfonate ABC transporter, permease protein  36.89 
 
 
337 aa  178  2e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.979433  normal 
 
 
-
 
NC_010505  Mrad2831_4838  binding-protein-dependent transport systems inner membrane component  40.24 
 
 
334 aa  178  2e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0115  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  39.76 
 
 
352 aa  177  3e-43  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2687  binding-protein-dependent transport systems inner membrane component  41.27 
 
 
342 aa  175  9e-43  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4458  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
345 aa  175  9.999999999999999e-43  Ralstonia pickettii 12J  Bacteria  normal  0.0470416  normal  0.49714 
 
 
-
 
NC_012857  Rpic12D_4592  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
345 aa  175  9.999999999999999e-43  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2517  putative alkanesulfonate ABC transporter, permease protein  39.69 
 
 
334 aa  174  1.9999999999999998e-42  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.562769 
 
 
-
 
NC_011666  Msil_2672  binding-protein-dependent transport systems inner membrane component  39.02 
 
 
346 aa  172  5.999999999999999e-42  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011365  Gdia_0858  binding-protein-dependent transport systems inner membrane component  37.75 
 
 
331 aa  169  5e-41  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.124749  normal 
 
 
-
 
NC_007951  Bxe_A2163  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  38.78 
 
 
353 aa  168  1e-40  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_013171  Apre_0527  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
342 aa  168  1e-40  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1328  binding-protein-dependent transport systems inner membrane component  42.45 
 
 
332 aa  168  1e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.46412  normal  0.348688 
 
 
-
 
NC_010725  Mpop_4900  binding-protein-dependent transport systems inner membrane component  41.98 
 
 
333 aa  167  2e-40  Methylobacterium populi BJ001  Bacteria  normal  0.572728  normal 
 
 
-
 
NC_010172  Mext_1168  binding-protein-dependent transport systems inner membrane component  42.45 
 
 
332 aa  167  2e-40  Methylobacterium extorquens PA1  Bacteria  normal  0.811206  normal  0.0956624 
 
 
-
 
NC_010002  Daci_5618  binding-protein-dependent transport systems inner membrane component  43.94 
 
 
351 aa  167  2.9999999999999998e-40  Delftia acidovorans SPH-1  Bacteria  normal  0.447889  normal  0.316795 
 
 
-
 
NC_011004  Rpal_2903  binding-protein-dependent transport systems inner membrane component  35.86 
 
 
332 aa  166  4e-40  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1918  binding-protein-dependent transport systems inner membrane component  34.33 
 
 
340 aa  166  4e-40  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_0163  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
310 aa  116  5e-25  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009012  Cthe_2791  binding-protein-dependent transport systems inner membrane component  28.82 
 
 
302 aa  116  5e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_2132  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  33.05 
 
 
262 aa  107  3e-22  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1031  sulfonate ABC transporter, permease protein  33.94 
 
 
261 aa  106  5e-22  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  31.39 
 
 
266 aa  101  2e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_013165  Shel_27200  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.66 
 
 
253 aa  101  2e-20  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2559  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
283 aa  100  3e-20  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
253 aa  100  3e-20  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
288 aa  100  3e-20  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
280 aa  100  5e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  27.71 
 
 
267 aa  99  1e-19  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  30 
 
 
319 aa  98.6  1e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  27.55 
 
 
273 aa  97.8  3e-19  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
305 aa  96.7  6e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
254 aa  96.3  8e-19  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  31.19 
 
 
269 aa  95.9  8e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_008639  Cpha266_0145  binding-protein-dependent transport systems inner membrane component  28.93 
 
 
266 aa  96.3  8e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0153  binding-protein-dependent transport systems inner membrane component  29.29 
 
 
277 aa  95.9  9e-19  Brachyspira murdochii DSM 12563  Bacteria  normal  0.589472  n/a   
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  27.65 
 
 
250 aa  95.5  1e-18  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
283 aa  95.5  1e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  28.77 
 
 
259 aa  95.1  2e-18  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  32.14 
 
 
285 aa  94  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_009637  MmarC7_0444  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
253 aa  94  4e-18  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_009135  MmarC5_0393  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
253 aa  93.2  6e-18  Methanococcus maripaludis C5  Archaea  normal  0.0876322  n/a   
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  31.84 
 
 
295 aa  92.8  8e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0673  binding-protein dependent transport system inner membrane protein  27.6 
 
 
275 aa  92.4  9e-18  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0666321  normal  0.331074 
 
 
-
 
NC_009975  MmarC6_1476  binding-protein-dependent transport systems inner membrane component  32.32 
 
 
253 aa  92  1e-17  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008553  Mthe_0521  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
239 aa  91.3  2e-17  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
291 aa  90.5  4e-17  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1975  binding-protein-dependent transport systems inner membrane component  33.65 
 
 
291 aa  90.5  4e-17  Burkholderia cenocepacia HI2424  Bacteria  normal  0.690359  n/a   
 
 
-
 
NC_011729  PCC7424_3526  nitrate ABC transporter, inner membrane subunit  31.11 
 
 
280 aa  89.7  7e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.471487 
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  28.7 
 
 
306 aa  89.4  8e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
274 aa  89.4  9e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  25.21 
 
 
249 aa  88.2  2e-16  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_007604  Synpcc7942_1489  nitrate transport permease  28.79 
 
 
278 aa  88.2  2e-16  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  25.23 
 
 
252 aa  88.6  2e-16  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_009715  CCV52592_1129  taurine transport system permease protein TauC  30.23 
 
 
241 aa  87.4  3e-16  Campylobacter curvus 525.92  Bacteria  normal  0.774255  n/a   
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  31.4 
 
 
274 aa  87.8  3e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_007520  Tcr_0034  binding-protein dependent transport system inner membrane protein  32.42 
 
 
276 aa  87.4  3e-16  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  31.71 
 
 
272 aa  87  4e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_008554  Sfum_2216  binding-protein-dependent transport systems inner membrane component  25.12 
 
 
314 aa  86.7  5e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.82677  normal  0.484673 
 
 
-
 
NC_013739  Cwoe_5602  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
263 aa  86.7  6e-16  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0552  binding-protein-dependent transport systems inner membrane component  27.35 
 
 
286 aa  86.7  6e-16  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.973794  normal 
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  29.22 
 
 
258 aa  86.7  6e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3457  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
251 aa  86.3  7e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.693916  hitchhiker  0.00170631 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  28.86 
 
 
277 aa  85.9  0.000000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007778  RPB_2837  binding-protein dependent transport system inner membrane protein  30.13 
 
 
266 aa  85.5  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.115716  normal 
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
291 aa  85.5  0.000000000000001  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  30.61 
 
 
277 aa  85.9  0.000000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  31.28 
 
 
278 aa  85.9  0.000000000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  27.54 
 
 
274 aa  84.7  0.000000000000002  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  30.62 
 
 
260 aa  85.1  0.000000000000002  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  27.18 
 
 
273 aa  84.7  0.000000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  27.18 
 
 
273 aa  84.7  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_009051  Memar_0850  binding-protein-dependent transport systems inner membrane component  34.11 
 
 
258 aa  84.7  0.000000000000002  Methanoculleus marisnigri JR1  Archaea  hitchhiker  0.00204788  n/a   
 
 
-
 
NC_010725  Mpop_3868  binding-protein-dependent transport systems inner membrane component  31.92 
 
 
285 aa  84.3  0.000000000000003  Methylobacterium populi BJ001  Bacteria  normal  normal  0.03471 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
314 aa  84  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1455  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
269 aa  84.3  0.000000000000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0865715  n/a   
 
 
-
 
NC_011729  PCC7424_4677  nitrate ABC transporter, inner membrane subunit  30.11 
 
 
279 aa  84.3  0.000000000000003  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  27.78 
 
 
272 aa  84  0.000000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_011884  Cyan7425_4924  nitrate ABC transporter, inner membrane subunit  30.37 
 
 
280 aa  84  0.000000000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.815767 
 
 
-
 
NC_011004  Rpal_2953  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
294 aa  84  0.000000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  23.96 
 
 
259 aa  84  0.000000000000004  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
273 aa  84  0.000000000000004  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_010725  Mpop_4185  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
283 aa  83.6  0.000000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.321257  normal 
 
 
-
 
NC_008781  Pnap_0040  binding-protein-dependent transport systems inner membrane component  26.48 
 
 
259 aa  83.2  0.000000000000006  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.832577  normal  0.34867 
 
 
-
 
NC_011884  Cyan7425_4571  nitrate ABC transporter, inner membrane subunit  28.1 
 
 
280 aa  83.2  0.000000000000006  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>