More than 300 homologs were found in PanDaTox collection
for query gene Rpic12D_4592 on replicon NC_012857
Organism: Ralstonia pickettii 12D



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012857  Rpic12D_4592  binding-protein-dependent transport systems inner membrane component  100 
 
 
345 aa  665    Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4458  binding-protein-dependent transport systems inner membrane component  100 
 
 
345 aa  665    Ralstonia pickettii 12J  Bacteria  normal  0.0470416  normal  0.49714 
 
 
-
 
NC_007973  Rmet_2220  binding-protein-dependent transport systems inner membrane component  73.56 
 
 
347 aa  476  1e-133  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00146165  normal  0.277213 
 
 
-
 
NC_010552  BamMC406_4150  binding-protein-dependent transport systems inner membrane component  68.66 
 
 
363 aa  441  1e-123  Burkholderia ambifaria MC40-6  Bacteria  normal  0.901317  normal  0.0679458 
 
 
-
 
NC_010515  Bcenmc03_3264  binding-protein-dependent transport systems inner membrane component  71.34 
 
 
365 aa  436  1e-121  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.657095  normal 
 
 
-
 
NC_008061  Bcen_4113  binding-protein-dependent transport systems inner membrane component  70.62 
 
 
365 aa  432  1e-120  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.18641  n/a   
 
 
-
 
NC_008543  Bcen2424_4253  binding-protein-dependent transport systems inner membrane component  70.62 
 
 
365 aa  432  1e-120  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0124034  normal  0.0867755 
 
 
-
 
NC_012791  Vapar_3868  binding-protein-dependent transport systems inner membrane component  68.85 
 
 
360 aa  424  1e-117  Variovorax paradoxus S110  Bacteria  normal  0.753162  n/a   
 
 
-
 
NC_008391  Bamb_3677  binding-protein-dependent transport systems inner membrane component  71.85 
 
 
363 aa  423  1e-117  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.959373 
 
 
-
 
NC_007511  Bcep18194_B1758  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  71.51 
 
 
364 aa  419  1e-116  Burkholderia sp. 383  Bacteria  normal  0.351017  normal  0.0158469 
 
 
-
 
NC_010086  Bmul_4337  binding-protein-dependent transport systems inner membrane component  69.35 
 
 
363 aa  420  1e-116  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.638266 
 
 
-
 
NC_010002  Daci_5618  binding-protein-dependent transport systems inner membrane component  66.47 
 
 
351 aa  356  3.9999999999999996e-97  Delftia acidovorans SPH-1  Bacteria  normal  0.447889  normal  0.316795 
 
 
-
 
NC_012560  Avin_31120  ABC transporter permease protein  65.32 
 
 
331 aa  347  2e-94  Azotobacter vinelandii DJ  Bacteria  normal  0.848336  n/a   
 
 
-
 
NC_009720  Xaut_2776  binding-protein-dependent transport systems inner membrane component  61.15 
 
 
352 aa  344  1e-93  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3268  binding-protein-dependent transport systems inner membrane component  64.78 
 
 
331 aa  342  5e-93  Pseudomonas putida GB-1  Bacteria  normal  normal  0.478821 
 
 
-
 
NC_011004  Rpal_2687  binding-protein-dependent transport systems inner membrane component  64.69 
 
 
342 aa  342  8e-93  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A2163  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  62.38 
 
 
353 aa  336  3.9999999999999995e-91  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1168  binding-protein-dependent transport systems inner membrane component  71.54 
 
 
332 aa  330  3e-89  Methylobacterium extorquens PA1  Bacteria  normal  0.811206  normal  0.0956624 
 
 
-
 
NC_011757  Mchl_1328  binding-protein-dependent transport systems inner membrane component  71.14 
 
 
332 aa  329  4e-89  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.46412  normal  0.348688 
 
 
-
 
NC_010725  Mpop_4900  binding-protein-dependent transport systems inner membrane component  70.73 
 
 
333 aa  327  3e-88  Methylobacterium populi BJ001  Bacteria  normal  0.572728  normal 
 
 
-
 
NC_007953  Bxe_C0115  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  62.3 
 
 
352 aa  326  4.0000000000000003e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2058  binding-protein-dependent transport systems inner membrane component  65.85 
 
 
348 aa  322  6e-87  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.911629  normal 
 
 
-
 
NC_010505  Mrad2831_4838  binding-protein-dependent transport systems inner membrane component  69.32 
 
 
334 aa  320  1.9999999999999998e-86  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5011  binding-protein-dependent transport systems inner membrane component  63.41 
 
 
331 aa  317  2e-85  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2672  binding-protein-dependent transport systems inner membrane component  58.14 
 
 
346 aa  308  1.0000000000000001e-82  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_2517  putative alkanesulfonate ABC transporter, permease protein  55.49 
 
 
334 aa  287  2e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.562769 
 
 
-
 
NC_011365  Gdia_0858  binding-protein-dependent transport systems inner membrane component  52.72 
 
 
331 aa  283  2.0000000000000002e-75  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.124749  normal 
 
 
-
 
NC_009485  BBta_2515  putative alkanesulfonate ABC transporter, permease protein  50.96 
 
 
337 aa  266  2.9999999999999995e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.979433  normal 
 
 
-
 
NC_011004  Rpal_2903  binding-protein-dependent transport systems inner membrane component  52.19 
 
 
332 aa  258  7e-68  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1357  binding-protein-dependent transport systems inner membrane component  42.76 
 
 
338 aa  236  4e-61  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0527  binding-protein-dependent transport systems inner membrane component  38.1 
 
 
342 aa  191  1e-47  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1571  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
355 aa  188  9e-47  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1918  binding-protein-dependent transport systems inner membrane component  38.21 
 
 
340 aa  188  1e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2791  binding-protein-dependent transport systems inner membrane component  29.25 
 
 
302 aa  128  2.0000000000000002e-28  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_0163  binding-protein-dependent transport systems inner membrane component  29.86 
 
 
310 aa  121  1.9999999999999998e-26  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
283 aa  111  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1238  nitrate transport permease  29.34 
 
 
279 aa  110  4.0000000000000004e-23  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  36.1 
 
 
288 aa  105  8e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  30.58 
 
 
277 aa  105  1e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  33.19 
 
 
290 aa  103  3e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  30.36 
 
 
258 aa  104  3e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0213  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
252 aa  103  4e-21  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  32.54 
 
 
269 aa  103  4e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.92 
 
 
273 aa  103  4e-21  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  29.24 
 
 
273 aa  101  1e-20  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  30.53 
 
 
295 aa  100  4e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  30.38 
 
 
252 aa  98.6  1e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
273 aa  98.2  2e-19  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
278 aa  97.1  4e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  30.12 
 
 
283 aa  97.1  4e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
274 aa  96.7  5e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_0102  binding-protein-dependent transport systems inner membrane component  34.43 
 
 
263 aa  96.7  5e-19  Variovorax paradoxus S110  Bacteria  normal  0.922239  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.51 
 
 
281 aa  96.3  7e-19  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  30.17 
 
 
277 aa  96.3  7e-19  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  31.35 
 
 
273 aa  95.9  9e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  31.35 
 
 
273 aa  95.9  9e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  32.07 
 
 
271 aa  95.5  1e-18  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  28.23 
 
 
257 aa  95.1  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  31.62 
 
 
261 aa  95.9  1e-18  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
314 aa  95.1  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0153  binding-protein-dependent transport systems inner membrane component  29.2 
 
 
277 aa  94.7  2e-18  Brachyspira murdochii DSM 12563  Bacteria  normal  0.589472  n/a   
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
319 aa  93.6  5e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  26.61 
 
 
255 aa  93.2  6e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_007955  Mbur_2132  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.34 
 
 
262 aa  92.8  7e-18  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_009921  Franean1_0722  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
272 aa  92.8  8e-18  Frankia sp. EAN1pec  Bacteria  normal  0.0102858  normal  0.0961586 
 
 
-
 
NC_012792  Vapar_5517  binding-protein-dependent transport systems inner membrane component  27.27 
 
 
256 aa  92  1e-17  Variovorax paradoxus S110  Bacteria  normal  0.16627  n/a   
 
 
-
 
NC_007355  Mbar_A1031  sulfonate ABC transporter, permease protein  28.92 
 
 
261 aa  92  1e-17  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  29.59 
 
 
266 aa  92  1e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  27.51 
 
 
267 aa  92  1e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3526  nitrate ABC transporter, inner membrane subunit  28.27 
 
 
280 aa  91.3  2e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.471487 
 
 
-
 
NC_007406  Nwi_0673  binding-protein dependent transport system inner membrane protein  29.05 
 
 
275 aa  91.7  2e-17  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0666321  normal  0.331074 
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  36.59 
 
 
274 aa  91.3  2e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  26.55 
 
 
305 aa  91.3  2e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  34.24 
 
 
277 aa  90.9  3e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_012560  Avin_21990  ABC transporter, inner membrane permease component  32.24 
 
 
273 aa  90.5  4e-17  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  32.24 
 
 
275 aa  90.5  4e-17  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
277 aa  90.5  4e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  27.41 
 
 
273 aa  89.7  6e-17  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  27.41 
 
 
273 aa  89.7  6e-17  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2104  nitrate ABC transporter, inner membrane subunit  28.45 
 
 
283 aa  89.4  7e-17  Pseudomonas mendocina ymp  Bacteria  normal  0.0291571  normal  0.0240092 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  29.7 
 
 
279 aa  89.4  8e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
254 aa  89.4  8e-17  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  29.46 
 
 
282 aa  88.6  1e-16  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  29.46 
 
 
282 aa  88.6  1e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_0250  binding-protein-dependent transport systems inner membrane component  29.78 
 
 
280 aa  88.6  1e-16  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1439  nitrate ABC transporter, inner membrane subunit  28.63 
 
 
310 aa  88.6  1e-16  Dickeya zeae Ech1591  Bacteria  normal  0.062597  n/a   
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  27.92 
 
 
283 aa  88.2  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_008825  Mpe_A1391  NO3-/NO2- ABC transporter  29 
 
 
305 aa  88.2  2e-16  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.36361 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  31.72 
 
 
260 aa  87.4  3e-16  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
291 aa  87.4  3e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  27.73 
 
 
263 aa  87.4  3e-16  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  28.26 
 
 
250 aa  87  4e-16  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_007947  Mfla_1557  binding-protein-dependent transport systems inner membrane component  33.55 
 
 
272 aa  86.7  5e-16  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.00127239  hitchhiker  0.00240392 
 
 
-
 
NC_011757  Mchl_3671  binding-protein-dependent transport systems inner membrane component  31.19 
 
 
287 aa  86.7  5e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0347715  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
257 aa  86.7  5e-16  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_010625  Bphy_6203  binding-protein-dependent transport systems inner membrane component  32.31 
 
 
284 aa  86.7  5e-16  Burkholderia phymatum STM815  Bacteria  normal  0.780444  normal  0.280504 
 
 
-
 
NC_009428  Rsph17025_0765  binding-protein-dependent transport systems inner membrane component  31.02 
 
 
265 aa  86.7  5e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  33.15 
 
 
291 aa  86.3  6e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  30.73 
 
 
279 aa  86.3  6e-16  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_011884  Cyan7425_4924  nitrate ABC transporter, inner membrane subunit  30.16 
 
 
280 aa  86.7  6e-16  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.815767 
 
 
-
 
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