More than 300 homologs were found in PanDaTox collection
for query gene Rmet_2220 on replicon NC_007973
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007973  Rmet_2220  binding-protein-dependent transport systems inner membrane component  100 
 
 
347 aa  673    Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00146165  normal  0.277213 
 
 
-
 
NC_012857  Rpic12D_4592  binding-protein-dependent transport systems inner membrane component  73.56 
 
 
345 aa  458  9.999999999999999e-129  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4458  binding-protein-dependent transport systems inner membrane component  73.56 
 
 
345 aa  458  9.999999999999999e-129  Ralstonia pickettii 12J  Bacteria  normal  0.0470416  normal  0.49714 
 
 
-
 
NC_010552  BamMC406_4150  binding-protein-dependent transport systems inner membrane component  73.09 
 
 
363 aa  456  1e-127  Burkholderia ambifaria MC40-6  Bacteria  normal  0.901317  normal  0.0679458 
 
 
-
 
NC_010515  Bcenmc03_3264  binding-protein-dependent transport systems inner membrane component  70.89 
 
 
365 aa  446  1.0000000000000001e-124  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.657095  normal 
 
 
-
 
NC_008061  Bcen_4113  binding-protein-dependent transport systems inner membrane component  70.61 
 
 
365 aa  446  1.0000000000000001e-124  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.18641  n/a   
 
 
-
 
NC_008543  Bcen2424_4253  binding-protein-dependent transport systems inner membrane component  70.61 
 
 
365 aa  446  1.0000000000000001e-124  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0124034  normal  0.0867755 
 
 
-
 
NC_010086  Bmul_4337  binding-protein-dependent transport systems inner membrane component  72.34 
 
 
363 aa  437  1e-121  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.638266 
 
 
-
 
NC_012791  Vapar_3868  binding-protein-dependent transport systems inner membrane component  69.35 
 
 
360 aa  435  1e-121  Variovorax paradoxus S110  Bacteria  normal  0.753162  n/a   
 
 
-
 
NC_008391  Bamb_3677  binding-protein-dependent transport systems inner membrane component  72.78 
 
 
363 aa  434  1e-120  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.959373 
 
 
-
 
NC_007511  Bcep18194_B1758  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  74.31 
 
 
364 aa  422  1e-117  Burkholderia sp. 383  Bacteria  normal  0.351017  normal  0.0158469 
 
 
-
 
NC_010322  PputGB1_3268  binding-protein-dependent transport systems inner membrane component  66.06 
 
 
331 aa  363  2e-99  Pseudomonas putida GB-1  Bacteria  normal  normal  0.478821 
 
 
-
 
NC_009720  Xaut_2776  binding-protein-dependent transport systems inner membrane component  57.85 
 
 
352 aa  358  9e-98  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31120  ABC transporter permease protein  63.03 
 
 
331 aa  352  5.9999999999999994e-96  Azotobacter vinelandii DJ  Bacteria  normal  0.848336  n/a   
 
 
-
 
NC_010002  Daci_5618  binding-protein-dependent transport systems inner membrane component  69.1 
 
 
351 aa  348  9e-95  Delftia acidovorans SPH-1  Bacteria  normal  0.447889  normal  0.316795 
 
 
-
 
NC_007951  Bxe_A2163  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  62.73 
 
 
353 aa  333  4e-90  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0115  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  64.38 
 
 
352 aa  328  8e-89  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2687  binding-protein-dependent transport systems inner membrane component  60.19 
 
 
342 aa  324  2e-87  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_2058  binding-protein-dependent transport systems inner membrane component  64.23 
 
 
348 aa  324  2e-87  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.911629  normal 
 
 
-
 
NC_010172  Mext_1168  binding-protein-dependent transport systems inner membrane component  69.08 
 
 
332 aa  322  6e-87  Methylobacterium extorquens PA1  Bacteria  normal  0.811206  normal  0.0956624 
 
 
-
 
NC_011757  Mchl_1328  binding-protein-dependent transport systems inner membrane component  68.44 
 
 
332 aa  322  8e-87  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.46412  normal  0.348688 
 
 
-
 
NC_011666  Msil_2672  binding-protein-dependent transport systems inner membrane component  59.34 
 
 
346 aa  320  1.9999999999999998e-86  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010725  Mpop_4900  binding-protein-dependent transport systems inner membrane component  68.2 
 
 
333 aa  318  9e-86  Methylobacterium populi BJ001  Bacteria  normal  0.572728  normal 
 
 
-
 
NC_010505  Mrad2831_4838  binding-protein-dependent transport systems inner membrane component  69.32 
 
 
334 aa  317  1e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5011  binding-protein-dependent transport systems inner membrane component  63.82 
 
 
331 aa  312  3.9999999999999997e-84  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011365  Gdia_0858  binding-protein-dependent transport systems inner membrane component  52.85 
 
 
331 aa  287  2e-76  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.124749  normal 
 
 
-
 
NC_009485  BBta_2517  putative alkanesulfonate ABC transporter, permease protein  52.44 
 
 
334 aa  283  3.0000000000000004e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.562769 
 
 
-
 
NC_009485  BBta_2515  putative alkanesulfonate ABC transporter, permease protein  51.86 
 
 
337 aa  267  2e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.979433  normal 
 
 
-
 
NC_011004  Rpal_2903  binding-protein-dependent transport systems inner membrane component  47.4 
 
 
332 aa  253  5.000000000000001e-66  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1357  binding-protein-dependent transport systems inner membrane component  40.86 
 
 
338 aa  219  7.999999999999999e-56  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1571  binding-protein-dependent transport systems inner membrane component  37.96 
 
 
355 aa  189  9e-47  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1918  binding-protein-dependent transport systems inner membrane component  38.52 
 
 
340 aa  185  9e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0527  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
342 aa  182  6e-45  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_009712  Mboo_0163  binding-protein-dependent transport systems inner membrane component  30.13 
 
 
310 aa  114  3e-24  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_009012  Cthe_2791  binding-protein-dependent transport systems inner membrane component  27.9 
 
 
302 aa  112  6e-24  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
283 aa  109  7.000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
288 aa  104  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  29.66 
 
 
277 aa  103  3e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  33.5 
 
 
269 aa  104  3e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_009943  Dole_0213  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
252 aa  100  3e-20  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30 
 
 
273 aa  100  3e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  30.41 
 
 
266 aa  100  5e-20  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  31.76 
 
 
285 aa  99  9e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  34.92 
 
 
277 aa  98.6  1e-19  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  31.75 
 
 
271 aa  98.6  1e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
277 aa  99  1e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
273 aa  98.6  2e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  26.96 
 
 
255 aa  97.1  4e-19  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.72 
 
 
281 aa  97.4  4e-19  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  30.65 
 
 
274 aa  96.3  7e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.08 
 
 
249 aa  95.9  9e-19  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
314 aa  95.5  1e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_1238  nitrate transport permease  25.9 
 
 
279 aa  95.1  1e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  32.39 
 
 
260 aa  94.4  2e-18  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_009720  Xaut_3459  binding-protein-dependent transport systems inner membrane component  27.5 
 
 
283 aa  94.7  2e-18  Xanthobacter autotrophicus Py2  Bacteria  normal  0.703735  normal 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  30.08 
 
 
283 aa  95.1  2e-18  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_007948  Bpro_2935  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
252 aa  94.4  3e-18  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A1031  sulfonate ABC transporter, permease protein  28.43 
 
 
261 aa  94  4e-18  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
273 aa  93.6  5e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  28.03 
 
 
258 aa  93.6  5e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
273 aa  93.6  5e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  31.3 
 
 
279 aa  93.2  6e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  33.94 
 
 
274 aa  93.2  6e-18  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_011832  Mpal_1145  binding-protein-dependent transport systems inner membrane component  30.34 
 
 
279 aa  92  1e-17  Methanosphaerula palustris E1-9c  Archaea  normal  0.208956  normal 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  32.47 
 
 
273 aa  92  1e-17  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  28.63 
 
 
263 aa  92.4  1e-17  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  35.47 
 
 
261 aa  91.3  2e-17  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_009428  Rsph17025_0778  binding-protein-dependent transport systems inner membrane component  32.57 
 
 
270 aa  91.7  2e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  31.5 
 
 
274 aa  90.9  3e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1812  ABC transporter, permease protein  27.42 
 
 
257 aa  90.9  3e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.554956  normal  0.627316 
 
 
-
 
NC_007760  Adeh_3750  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  32.7 
 
 
269 aa  90.1  5e-17  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3807  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
269 aa  90.1  5e-17  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3891  binding-protein-dependent transport systems inner membrane component  32.7 
 
 
269 aa  90.1  5e-17  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  29.81 
 
 
278 aa  90.1  5e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_011729  PCC7424_3526  nitrate ABC transporter, inner membrane subunit  28.46 
 
 
280 aa  89.7  6e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.471487 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  27.95 
 
 
267 aa  89.7  7e-17  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_0676  binding-protein-dependent transport systems inner membrane component  26.61 
 
 
279 aa  89.7  7e-17  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.30868 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  31.23 
 
 
274 aa  89.4  8e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_009921  Franean1_0722  binding-protein-dependent transport systems inner membrane component  32.58 
 
 
272 aa  89.4  9e-17  Frankia sp. EAN1pec  Bacteria  normal  0.0102858  normal  0.0961586 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
279 aa  89  1e-16  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  29.57 
 
 
250 aa  89  1e-16  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  31.8 
 
 
290 aa  89  1e-16  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
264 aa  89  1e-16  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_011666  Msil_0772  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
302 aa  89  1e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0528102 
 
 
-
 
NC_011832  Mpal_1076  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
269 aa  88.6  1e-16  Methanosphaerula palustris E1-9c  Archaea  normal  0.406887  normal  0.454808 
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  28.02 
 
 
264 aa  88.6  2e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  28.87 
 
 
277 aa  88.6  2e-16  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_007955  Mbur_2132  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  31.34 
 
 
262 aa  87.8  2e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  29.6 
 
 
295 aa  87.8  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  30.29 
 
 
319 aa  87.8  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  27.51 
 
 
305 aa  87.8  2e-16  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_27200  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  27.12 
 
 
253 aa  88.6  2e-16  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  28.02 
 
 
264 aa  88.6  2e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
264 aa  87.4  3e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  27.57 
 
 
306 aa  87.4  3e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_009253  Dred_1575  binding-protein-dependent transport systems inner membrane component  28.5 
 
 
254 aa  87  4e-16  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0747147  n/a   
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  29.33 
 
 
282 aa  86.7  5e-16  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  29.33 
 
 
282 aa  86.7  5e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4074  binding-protein-dependent transport systems inner membrane component  28.34 
 
 
281 aa  86.7  6e-16  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.265456 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
264 aa  86.7  6e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
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