More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_3160 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  100 
 
 
274 aa  543  1e-154  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  78.49 
 
 
260 aa  389  1e-107  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_010501  PputW619_5010  binding-protein-dependent transport systems inner membrane component  75.98 
 
 
260 aa  366  1e-100  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  73.28 
 
 
291 aa  344  1e-93  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  69.76 
 
 
291 aa  337  9.999999999999999e-92  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1975  binding-protein-dependent transport systems inner membrane component  69.76 
 
 
291 aa  337  9.999999999999999e-92  Burkholderia cenocepacia HI2424  Bacteria  normal  0.690359  n/a   
 
 
-
 
NC_010725  Mpop_4185  binding-protein-dependent transport systems inner membrane component  73.95 
 
 
283 aa  335  5e-91  Methylobacterium populi BJ001  Bacteria  normal  0.321257  normal 
 
 
-
 
NC_009485  BBta_4879  putative ABC transporter, permease protein  72.4 
 
 
263 aa  329  2e-89  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.132635 
 
 
-
 
NC_011757  Mchl_3671  binding-protein-dependent transport systems inner membrane component  75.77 
 
 
287 aa  328  6e-89  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0347715  normal 
 
 
-
 
NC_010508  Bcenmc03_1999  binding-protein-dependent transport systems inner membrane component  69.76 
 
 
291 aa  323  2e-87  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_1295  binding-protein-dependent transport systems inner membrane component  70.12 
 
 
290 aa  304  1.0000000000000001e-81  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0425684  normal  0.379949 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  46.75 
 
 
319 aa  236  2e-61  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  47.13 
 
 
306 aa  229  2e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_007406  Nwi_0673  binding-protein dependent transport system inner membrane protein  50.81 
 
 
275 aa  223  2e-57  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0666321  normal  0.331074 
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  44.32 
 
 
295 aa  217  1e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  45.08 
 
 
305 aa  215  7e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  42.96 
 
 
314 aa  211  1e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2216  binding-protein-dependent transport systems inner membrane component  41.08 
 
 
314 aa  194  1e-48  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.82677  normal  0.484673 
 
 
-
 
NC_008825  Mpe_A0926  nitrate ABC transporter, permease protein, putative  39.27 
 
 
274 aa  178  1e-43  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2218  binding-protein-dependent transport systems inner membrane component  36.51 
 
 
290 aa  168  9e-41  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.484673 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  41.5 
 
 
273 aa  166  2.9999999999999998e-40  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  40.79 
 
 
283 aa  166  4e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  44 
 
 
269 aa  165  8e-40  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  42.79 
 
 
288 aa  164  1.0000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_008825  Mpe_A0924  ABC transporter permease protein  41.62 
 
 
258 aa  162  5.0000000000000005e-39  Methylibium petroleiphilum PM1  Bacteria  normal  0.175022  normal 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  36.82 
 
 
254 aa  152  5e-36  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  37.67 
 
 
277 aa  151  8.999999999999999e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007948  Bpro_2935  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
252 aa  148  9e-35  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5412  binding-protein dependent transport system inner membrane protein  38.24 
 
 
260 aa  147  2.0000000000000003e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.210037  hitchhiker  0.00191971 
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  38.4 
 
 
262 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  38.4 
 
 
262 aa  146  3e-34  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  39.9 
 
 
253 aa  145  7.0000000000000006e-34  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  39.41 
 
 
285 aa  145  9e-34  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_013161  Cyan8802_4458  nitrate ABC transporter, inner membrane subunit  32.95 
 
 
277 aa  143  3e-33  Cyanothece sp. PCC 8802  Bacteria  normal  0.698055  normal  0.534513 
 
 
-
 
NC_011726  PCC8801_4395  nitrate ABC transporter, inner membrane subunit  32.95 
 
 
277 aa  143  3e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  34.84 
 
 
279 aa  142  4e-33  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
265 aa  142  5e-33  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
281 aa  142  5e-33  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_012791  Vapar_2975  binding-protein-dependent transport systems inner membrane component  39.41 
 
 
284 aa  142  6e-33  Variovorax paradoxus S110  Bacteria  normal  0.27836  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
265 aa  141  9e-33  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  34.68 
 
 
255 aa  141  9e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
265 aa  141  9.999999999999999e-33  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  35.93 
 
 
273 aa  141  9.999999999999999e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_2205  nitrate ABC transporter, inner membrane subunit  39.52 
 
 
280 aa  141  9.999999999999999e-33  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5414  putative nitrate ABC transporter (permease protein) (ntrB-like protein)  40 
 
 
279 aa  141  9.999999999999999e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481789  normal 
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  35.93 
 
 
273 aa  141  9.999999999999999e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  37.34 
 
 
265 aa  141  9.999999999999999e-33  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_009485  BBta_2535  putative taurine ABC transporter, permease protein  35.82 
 
 
282 aa  140  3e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.254862  normal 
 
 
-
 
NC_010505  Mrad2831_4568  binding-protein-dependent transport systems inner membrane component  41.87 
 
 
286 aa  139  3.9999999999999997e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4637  binding-protein-dependent transport systems inner membrane component  39.48 
 
 
283 aa  139  3.9999999999999997e-32  Delftia acidovorans SPH-1  Bacteria  normal  0.258867  hitchhiker  0.00000636426 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  36.9 
 
 
273 aa  139  4.999999999999999e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_009975  MmarC6_1476  binding-protein-dependent transport systems inner membrane component  39.23 
 
 
253 aa  139  4.999999999999999e-32  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_008340  Mlg_2588  nitrate ABC transporter, inner membrane subunit  37.38 
 
 
279 aa  139  4.999999999999999e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  hitchhiker  0.00171927 
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  36.86 
 
 
264 aa  139  6e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
264 aa  139  6e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2618  nitrate ABC transporter, inner membrane subunit  41.62 
 
 
279 aa  139  6e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.234813 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  36.4 
 
 
263 aa  139  7e-32  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011832  Mpal_1076  binding-protein-dependent transport systems inner membrane component  36.36 
 
 
269 aa  138  8.999999999999999e-32  Methanosphaerula palustris E1-9c  Archaea  normal  0.406887  normal  0.454808 
 
 
-
 
NC_007951  Bxe_A2492  ABC aliphatic sulfonates transporter, innermembrane subunit  40.08 
 
 
280 aa  138  8.999999999999999e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.773133 
 
 
-
 
NC_008752  Aave_3042  binding-protein-dependent transport systems inner membrane component  39.06 
 
 
292 aa  138  8.999999999999999e-32  Acidovorax citrulli AAC00-1  Bacteria  normal  0.780897  normal  0.0430449 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
273 aa  137  2e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  33.21 
 
 
279 aa  137  2e-31  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
264 aa  137  2e-31  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_010681  Bphyt_1745  binding-protein-dependent transport systems inner membrane component  40.08 
 
 
280 aa  137  2e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2055  nitrate transport permease  39.5 
 
 
279 aa  137  2e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.562067  normal 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
273 aa  137  2e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  37.65 
 
 
273 aa  137  2e-31  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_014150  Bmur_0154  binding-protein-dependent transport systems inner membrane component  34.96 
 
 
264 aa  137  2e-31  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2638  ABC sulfonate transporter, inner membrane subunit  33.2 
 
 
279 aa  137  3.0000000000000003e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.0950643  hitchhiker  0.0000361652 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  36.48 
 
 
263 aa  136  3.0000000000000003e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_5130  binding-protein-dependent transport systems inner membrane component  36.97 
 
 
272 aa  136  4e-31  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.0470724 
 
 
-
 
NC_009637  MmarC7_0444  binding-protein-dependent transport systems inner membrane component  38.76 
 
 
253 aa  135  5e-31  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_011004  Rpal_2404  nitrate ABC transporter, inner membrane subunit  39.6 
 
 
279 aa  136  5e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.105129  n/a   
 
 
-
 
NC_009832  Spro_4564  taurine transporter subunit  31.03 
 
 
279 aa  135  6.0000000000000005e-31  Serratia proteamaculans 568  Bacteria  normal  normal  0.746145 
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  36.91 
 
 
259 aa  135  6.0000000000000005e-31  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  34.96 
 
 
322 aa  135  8e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_010508  Bcenmc03_1539  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
270 aa  135  8e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0890555  normal 
 
 
-
 
NC_008060  Bcen_1083  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
270 aa  135  8e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1563  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
270 aa  135  8e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
264 aa  135  8e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1648  binding-protein-dependent transport systems inner membrane component  38.4 
 
 
283 aa  135  9e-31  Burkholderia phymatum STM815  Bacteria  normal  0.189471  normal  0.0804385 
 
 
-
 
NC_007510  Bcep18194_A4705  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  39.41 
 
 
270 aa  135  9e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009135  MmarC5_0393  binding-protein-dependent transport systems inner membrane component  38.05 
 
 
253 aa  135  9.999999999999999e-31  Methanococcus maripaludis C5  Archaea  normal  0.0876322  n/a   
 
 
-
 
NC_011757  Mchl_1261  binding-protein-dependent transport systems inner membrane component  38.55 
 
 
293 aa  135  9.999999999999999e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.113651  normal 
 
 
-
 
NC_009074  BURPS668_1822  aliphatic sulfonates ABC transporter, permease protein  38.37 
 
 
269 aa  134  1.9999999999999998e-30  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2500  aliphatic sulfonate ABC transporter, permease protein  38.93 
 
 
268 aa  134  1.9999999999999998e-30  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1464  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
270 aa  133  1.9999999999999998e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.0183453  n/a   
 
 
-
 
NC_010084  Bmul_1669  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
273 aa  133  3e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.5369  normal  0.169212 
 
 
-
 
NC_007355  Mbar_A1031  sulfonate ABC transporter, permease protein  35.02 
 
 
261 aa  133  3e-30  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_007604  Synpcc7942_2106  nitrate transport permease  38.01 
 
 
263 aa  133  3e-30  Synechococcus elongatus PCC 7942  Bacteria  normal  0.727969  normal 
 
 
-
 
NC_013205  Aaci_2846  binding-protein-dependent transport systems inner membrane component  33.76 
 
 
260 aa  133  3e-30  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000143494  n/a   
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  34.13 
 
 
279 aa  133  3.9999999999999996e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
264 aa  133  3.9999999999999996e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_007347  Reut_A1975  binding-protein dependent transport system inner membrane protein  36.58 
 
 
267 aa  132  5e-30  Ralstonia eutropha JMP134  Bacteria  normal  0.59364  n/a   
 
 
-
 
NC_009485  BBta_2819  nitrate transport permease protein (nrtB)  37.69 
 
 
304 aa  132  5e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.233469  normal 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
263 aa  132  5e-30  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1837  aliphatic sulfonates ABC transporter, permease protein  38.78 
 
 
269 aa  132  6e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  0.669476  n/a   
 
 
-
 
NC_007005  Psyr_4875  binding-protein dependent transport system inner membrane protein  37.71 
 
 
265 aa  132  6.999999999999999e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746085  normal 
 
 
-
 
NC_007908  Rfer_1776  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
294 aa  132  6.999999999999999e-30  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A0381  aliphatic sulfonate ABC transporter, permease protein  38.78 
 
 
273 aa  132  6.999999999999999e-30  Burkholderia mallei NCTC 10229  Bacteria  normal  0.410212  n/a   
 
 
-
 
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