More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3868 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3868  binding-protein-dependent transport systems inner membrane component  100 
 
 
360 aa  699    Variovorax paradoxus S110  Bacteria  normal  0.753162  n/a   
 
 
-
 
NC_007973  Rmet_2220  binding-protein-dependent transport systems inner membrane component  69.35 
 
 
347 aa  441  9.999999999999999e-123  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00146165  normal  0.277213 
 
 
-
 
NC_010552  BamMC406_4150  binding-protein-dependent transport systems inner membrane component  70.22 
 
 
363 aa  418  1e-116  Burkholderia ambifaria MC40-6  Bacteria  normal  0.901317  normal  0.0679458 
 
 
-
 
NC_010515  Bcenmc03_3264  binding-protein-dependent transport systems inner membrane component  72.61 
 
 
365 aa  414  1e-114  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.657095  normal 
 
 
-
 
NC_010678  Rpic_4458  binding-protein-dependent transport systems inner membrane component  69.59 
 
 
345 aa  412  1e-114  Ralstonia pickettii 12J  Bacteria  normal  0.0470416  normal  0.49714 
 
 
-
 
NC_012857  Rpic12D_4592  binding-protein-dependent transport systems inner membrane component  69.59 
 
 
345 aa  412  1e-114  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4113  binding-protein-dependent transport systems inner membrane component  72.52 
 
 
365 aa  409  1e-113  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.18641  n/a   
 
 
-
 
NC_008543  Bcen2424_4253  binding-protein-dependent transport systems inner membrane component  72.52 
 
 
365 aa  409  1e-113  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0124034  normal  0.0867755 
 
 
-
 
NC_010086  Bmul_4337  binding-protein-dependent transport systems inner membrane component  70.86 
 
 
363 aa  407  1.0000000000000001e-112  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.638266 
 
 
-
 
NC_008391  Bamb_3677  binding-protein-dependent transport systems inner membrane component  70.96 
 
 
363 aa  405  1.0000000000000001e-112  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.959373 
 
 
-
 
NC_007511  Bcep18194_B1758  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  71.1 
 
 
364 aa  390  1e-107  Burkholderia sp. 383  Bacteria  normal  0.351017  normal  0.0158469 
 
 
-
 
NC_010002  Daci_5618  binding-protein-dependent transport systems inner membrane component  71.51 
 
 
351 aa  387  1e-106  Delftia acidovorans SPH-1  Bacteria  normal  0.447889  normal  0.316795 
 
 
-
 
NC_009720  Xaut_2776  binding-protein-dependent transport systems inner membrane component  57.91 
 
 
352 aa  385  1e-106  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_31120  ABC transporter permease protein  70.63 
 
 
331 aa  368  1e-100  Azotobacter vinelandii DJ  Bacteria  normal  0.848336  n/a   
 
 
-
 
NC_010322  PputGB1_3268  binding-protein-dependent transport systems inner membrane component  66.35 
 
 
331 aa  356  3.9999999999999996e-97  Pseudomonas putida GB-1  Bacteria  normal  normal  0.478821 
 
 
-
 
NC_007951  Bxe_A2163  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  62.31 
 
 
353 aa  344  1e-93  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2687  binding-protein-dependent transport systems inner membrane component  62.3 
 
 
342 aa  344  2e-93  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0115  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  64.38 
 
 
352 aa  339  2.9999999999999998e-92  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1168  binding-protein-dependent transport systems inner membrane component  68.87 
 
 
332 aa  332  4e-90  Methylobacterium extorquens PA1  Bacteria  normal  0.811206  normal  0.0956624 
 
 
-
 
NC_011757  Mchl_1328  binding-protein-dependent transport systems inner membrane component  68.87 
 
 
332 aa  332  5e-90  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.46412  normal  0.348688 
 
 
-
 
NC_008688  Pden_5011  binding-protein-dependent transport systems inner membrane component  56.47 
 
 
331 aa  330  2e-89  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2672  binding-protein-dependent transport systems inner membrane component  61.67 
 
 
346 aa  327  1.0000000000000001e-88  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010725  Mpop_4900  binding-protein-dependent transport systems inner membrane component  67.7 
 
 
333 aa  328  1.0000000000000001e-88  Methylobacterium populi BJ001  Bacteria  normal  0.572728  normal 
 
 
-
 
NC_010505  Mrad2831_4838  binding-protein-dependent transport systems inner membrane component  66.8 
 
 
334 aa  321  9.999999999999999e-87  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_2058  binding-protein-dependent transport systems inner membrane component  57.58 
 
 
348 aa  320  1.9999999999999998e-86  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.911629  normal 
 
 
-
 
NC_011365  Gdia_0858  binding-protein-dependent transport systems inner membrane component  51.76 
 
 
331 aa  306  3e-82  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.124749  normal 
 
 
-
 
NC_009485  BBta_2517  putative alkanesulfonate ABC transporter, permease protein  53.1 
 
 
334 aa  305  7e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.562769 
 
 
-
 
NC_009485  BBta_2515  putative alkanesulfonate ABC transporter, permease protein  50.3 
 
 
337 aa  285  1.0000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.979433  normal 
 
 
-
 
NC_011004  Rpal_2903  binding-protein-dependent transport systems inner membrane component  45.92 
 
 
332 aa  268  7e-71  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1357  binding-protein-dependent transport systems inner membrane component  40.86 
 
 
338 aa  216  5e-55  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1918  binding-protein-dependent transport systems inner membrane component  39.34 
 
 
340 aa  199  6e-50  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1571  binding-protein-dependent transport systems inner membrane component  40.41 
 
 
355 aa  190  4e-47  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0527  binding-protein-dependent transport systems inner membrane component  35.43 
 
 
342 aa  181  1e-44  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  33.85 
 
 
283 aa  123  6e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  38.12 
 
 
288 aa  119  7e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  33.93 
 
 
269 aa  116  6e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_009012  Cthe_2791  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
302 aa  116  6.9999999999999995e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1238  nitrate transport permease  29.18 
 
 
279 aa  115  1.0000000000000001e-24  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_0163  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
310 aa  113  6e-24  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  30.97 
 
 
277 aa  112  9e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_009943  Dole_0213  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
252 aa  108  2e-22  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  31.17 
 
 
267 aa  107  4e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.98 
 
 
273 aa  106  6e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_009485  BBta_2566  ABC transporter, membrane subunit  31.54 
 
 
252 aa  105  1e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.345232 
 
 
-
 
NC_007348  Reut_B5801  binding-protein dependent transport system inner membrane protein  34.32 
 
 
290 aa  103  4e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0846  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
255 aa  103  4e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.185051 
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  30.49 
 
 
277 aa  102  8e-21  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  29.48 
 
 
283 aa  101  2e-20  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_004311  BRA1188  taurine ABC transporter, permease protein  30.81 
 
 
250 aa  101  2e-20  Brucella suis 1330  Bacteria  normal  0.0612406  n/a   
 
 
-
 
NC_009921  Franean1_0722  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
272 aa  101  2e-20  Frankia sp. EAN1pec  Bacteria  normal  0.0102858  normal  0.0961586 
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  29.87 
 
 
305 aa  100  5e-20  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  31.5 
 
 
274 aa  99.8  6e-20  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3787  binding-protein-dependent transport systems inner membrane component  36.31 
 
 
314 aa  99.4  9e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3065  binding-protein-dependent transport systems inner membrane component  31.22 
 
 
280 aa  99  1e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.228654 
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  32.98 
 
 
281 aa  98.2  2e-19  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
273 aa  97.4  3e-19  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  33.14 
 
 
319 aa  97.8  3e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
NC_012560  Avin_21990  ABC transporter, inner membrane permease component  32.79 
 
 
273 aa  97.1  4e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
273 aa  97.1  4e-19  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  32.61 
 
 
273 aa  97.1  4e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_013161  Cyan8802_3729  nitrate ABC transporter, inner membrane subunit  30.67 
 
 
280 aa  96.7  5e-19  Cyanothece sp. PCC 8802  Bacteria  normal  0.0184404  normal  0.11569 
 
 
-
 
NC_007492  Pfl01_3160  binding-protein dependent transport system inner membrane protein  29.26 
 
 
274 aa  97.1  5e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.913146  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
273 aa  96.7  5e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_011726  PCC8801_3675  nitrate ABC transporter, inner membrane subunit  30.67 
 
 
280 aa  96.7  5e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_8275  ABC-type transporter, permease protein  32.03 
 
 
272 aa  96.7  6e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.144641 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  29.89 
 
 
282 aa  96.3  8e-19  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_013510  Tcur_0464  binding-protein-dependent transport systems inner membrane component  29.2 
 
 
273 aa  95.5  1e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  26.89 
 
 
275 aa  95.5  1e-18  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2479  binding-protein-dependent transport systems inner membrane component  29.71 
 
 
258 aa  94.7  2e-18  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  31.44 
 
 
274 aa  94.7  2e-18  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3457  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
251 aa  94  3e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.693916  hitchhiker  0.00170631 
 
 
-
 
NC_007413  Ava_0874  nitrate transport permease  31.88 
 
 
283 aa  94.4  3e-18  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00348419  hitchhiker  0.00524559 
 
 
-
 
NC_010511  M446_5130  binding-protein-dependent transport systems inner membrane component  31.68 
 
 
272 aa  94.4  3e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.612608  normal  0.0470724 
 
 
-
 
NC_013159  Svir_34320  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  29.88 
 
 
273 aa  94.4  3e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  33.16 
 
 
277 aa  94.4  3e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_011729  PCC7424_0640  nitrate ABC transporter, inner membrane subunit  31.44 
 
 
279 aa  94  3e-18  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  29.52 
 
 
282 aa  93.6  4e-18  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  30.98 
 
 
271 aa  93.6  4e-18  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_013131  Caci_4306  binding-protein-dependent transport systems inner membrane component  30.77 
 
 
278 aa  94  4e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0649738  hitchhiker  0.00238236 
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  29.52 
 
 
282 aa  93.6  4e-18  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1899  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
275 aa  94  4e-18  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
277 aa  94  4e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_008825  Mpe_A1391  NO3-/NO2- ABC transporter  28.76 
 
 
305 aa  94  4e-18  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.36361 
 
 
-
 
NC_013510  Tcur_1385  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
284 aa  93.6  5e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0616622  n/a   
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  29.11 
 
 
266 aa  93.6  5e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_007777  Francci3_0250  binding-protein-dependent transport systems inner membrane component  30 
 
 
280 aa  93.6  5e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  31.06 
 
 
274 aa  93.6  5e-18  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_010510  Mrad2831_6154  binding-protein-dependent transport systems inner membrane component  29.2 
 
 
295 aa  93.6  5e-18  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  30.7 
 
 
285 aa  93.2  6e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3750  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  33.96 
 
 
269 aa  93.2  6e-18  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2220  taurine ABC transporter, permease protein  31 
 
 
283 aa  93.2  6e-18  Burkholderia pseudomallei 668  Bacteria  normal  0.215273  n/a   
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  33.69 
 
 
260 aa  92.8  7e-18  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_011891  A2cp1_3891  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
269 aa  93.2  7e-18  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1369  ABC transporter membrane protein  30.26 
 
 
272 aa  93.2  7e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0458182 
 
 
-
 
NC_011145  AnaeK_3807  binding-protein-dependent transport systems inner membrane component  33.96 
 
 
269 aa  93.2  7e-18  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0697  taurine ABC transporter, permease protein  31 
 
 
283 aa  93.2  7e-18  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
291 aa  92.8  8e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_007604  Synpcc7942_1489  nitrate transport permease  29.73 
 
 
278 aa  92.8  8e-18  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_2019  taurine ABC transporter, permease protein  31 
 
 
285 aa  92.8  8e-18  Burkholderia mallei NCTC 10229  Bacteria  normal  0.484134  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2133  taurine ABC transporter, permease protein  31 
 
 
283 aa  92.8  8e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  0.186654  n/a   
 
 
-
 
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