More than 300 homologs were found in PanDaTox collection
for query gene Tcr_0034 on replicon NC_007520
Organism: Thiomicrospira crunogena XCL-2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007520  Tcr_0034  binding-protein dependent transport system inner membrane protein  100 
 
 
276 aa  545  1e-154  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0966  binding-protein-dependent transport systems inner membrane component  67.77 
 
 
279 aa  335  3.9999999999999995e-91  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.136509 
 
 
-
 
NC_007778  RPB_0309  binding-protein dependent transport system inner membrane protein  60.8 
 
 
277 aa  307  1.0000000000000001e-82  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.409097 
 
 
-
 
NC_011666  Msil_2835  binding-protein-dependent transport systems inner membrane component  57.32 
 
 
276 aa  284  1.0000000000000001e-75  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010725  Mpop_3868  binding-protein-dependent transport systems inner membrane component  56.71 
 
 
285 aa  263  2e-69  Methylobacterium populi BJ001  Bacteria  normal  normal  0.03471 
 
 
-
 
NC_011757  Mchl_3794  binding-protein-dependent transport systems inner membrane component  55.84 
 
 
285 aa  257  1e-67  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.185627 
 
 
-
 
NC_010172  Mext_3486  binding-protein-dependent transport systems inner membrane component  56.28 
 
 
285 aa  256  3e-67  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0145  binding-protein-dependent transport systems inner membrane component  45.23 
 
 
266 aa  209  3e-53  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0099  nitrate/nitrite/cyanate ABC transporter inner membrane protein  44.23 
 
 
277 aa  209  4e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.291864  normal  0.355691 
 
 
-
 
NC_007952  Bxe_B1541  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  43.95 
 
 
281 aa  193  2e-48  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6514  binding-protein-dependent transport systems inner membrane component  41.48 
 
 
275 aa  187  2e-46  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6748  binding-protein-dependent transport systems inner membrane component  41.48 
 
 
275 aa  187  2e-46  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.133303 
 
 
-
 
NC_007595  Synpcc7942_B2630  sulfonate ABC transporter, permease protein, putative  44.2 
 
 
266 aa  186  3e-46  Synechococcus elongatus PCC 7942  Bacteria  normal  0.312135  normal 
 
 
-
 
NC_002947  PP_3635  binding-protein-dependent transport systems inner membrane component  45.75 
 
 
251 aa  185  6e-46  Pseudomonas putida KT2440  Bacteria  normal  0.606268  normal  0.873181 
 
 
-
 
NC_010512  Bcenmc03_6337  binding-protein-dependent transport systems inner membrane component  41.09 
 
 
275 aa  185  6e-46  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5822  binding-protein-dependent transport systems inner membrane component  49.34 
 
 
241 aa  184  2.0000000000000003e-45  Delftia acidovorans SPH-1  Bacteria  normal  0.367586  normal  0.455347 
 
 
-
 
NC_009512  Pput_2098  binding-protein-dependent transport systems inner membrane component  45.28 
 
 
251 aa  183  3e-45  Pseudomonas putida F1  Bacteria  normal  normal  0.660602 
 
 
-
 
NC_013510  Tcur_1455  binding-protein-dependent transport systems inner membrane component  44.59 
 
 
269 aa  181  1e-44  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0865715  n/a   
 
 
-
 
NC_010322  PputGB1_2277  binding-protein-dependent transport systems inner membrane component  45.28 
 
 
251 aa  175  7e-43  Pseudomonas putida GB-1  Bacteria  normal  normal  0.554921 
 
 
-
 
NC_007406  Nwi_0456  binding-protein dependent transport system inner membrane protein  44 
 
 
285 aa  162  4.0000000000000004e-39  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_34520  ABC transporter permease  48.36 
 
 
254 aa  156  3e-37  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.132889  normal  0.0672965 
 
 
-
 
NC_009656  PSPA7_2932  ABC transporter permease  48.36 
 
 
254 aa  156  4e-37  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_007948  Bpro_2935  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
252 aa  144  2e-33  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_2324  nitrate ABC transporter, inner membrane subunit  35.42 
 
 
293 aa  132  6e-30  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  37.37 
 
 
261 aa  131  1.0000000000000001e-29  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_009802  CCC13826_0233  ABC transporter, permease protein  36.59 
 
 
241 aa  130  3e-29  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_1129  taurine transport system permease protein TauC  36.19 
 
 
241 aa  126  3e-28  Campylobacter curvus 525.92  Bacteria  normal  0.774255  n/a   
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  30.23 
 
 
263 aa  126  4.0000000000000003e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0231  binding-protein-dependent transport systems inner membrane component  31.05 
 
 
279 aa  124  1e-27  Pseudomonas putida KT2440  Bacteria  normal  0.33405  hitchhiker  0.000710194 
 
 
-
 
NC_003295  RSc0380  putative nitrate transmembrane ABC transporter protein  35.42 
 
 
287 aa  125  1e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.931268 
 
 
-
 
NC_013441  Gbro_3478  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
291 aa  125  1e-27  Gordonia bronchialis DSM 43247  Bacteria  normal  0.466071  n/a   
 
 
-
 
NC_010682  Rpic_0236  nitrate ABC transporter, inner membrane subunit  34.9 
 
 
283 aa  125  1e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0257  nitrate ABC transporter, inner membrane subunit  35.08 
 
 
283 aa  124  1e-27  Ralstonia pickettii 12D  Bacteria  normal  normal  0.738144 
 
 
-
 
NC_008599  CFF8240_0620  taurine transport system permease protein TauC  33.64 
 
 
245 aa  124  1e-27  Campylobacter fetus subsp. fetus 82-40  Bacteria  hitchhiker  0.00071484  n/a   
 
 
-
 
NC_008752  Aave_2146  nitrate ABC transporter, inner membrane subunit  31.8 
 
 
315 aa  125  1e-27  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010730  SYO3AOP1_0055  nitrate ABC transporter, inner membrane subunit  29.46 
 
 
256 aa  124  2e-27  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  31.78 
 
 
264 aa  123  3e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  31.78 
 
 
264 aa  123  3e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1704  nitrate ABC transporter, inner membrane subunit  33.16 
 
 
311 aa  123  3e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  33.99 
 
 
253 aa  123  4e-27  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_0164  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
253 aa  122  7e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0159  binding-protein-dependent transport systems inner membrane component  33.18 
 
 
253 aa  122  7e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  31.46 
 
 
262 aa  122  8e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  30.37 
 
 
264 aa  122  9e-27  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_008554  Sfum_1642  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
231 aa  122  9e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0324285  normal  0.0160388 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  29.63 
 
 
263 aa  122  9e-27  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2273  nitrate transport permease  33.33 
 
 
299 aa  121  9.999999999999999e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0246  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
279 aa  121  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  0.0570948  normal  0.0921514 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  31.46 
 
 
262 aa  120  1.9999999999999998e-26  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1439  nitrate ABC transporter, inner membrane subunit  33.85 
 
 
310 aa  120  1.9999999999999998e-26  Dickeya zeae Ech1591  Bacteria  normal  0.062597  n/a   
 
 
-
 
NC_012917  PC1_2732  nitrate ABC transporter, inner membrane subunit  32.37 
 
 
304 aa  121  1.9999999999999998e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0882865  n/a   
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  33.5 
 
 
271 aa  120  1.9999999999999998e-26  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_010501  PputW619_4981  binding-protein-dependent transport systems inner membrane component  32.26 
 
 
279 aa  121  1.9999999999999998e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.588836 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  35.96 
 
 
288 aa  121  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_013517  Sterm_0483  binding-protein-dependent transport systems inner membrane component  29.05 
 
 
275 aa  120  3e-26  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1489  nitrate transport permease  37.23 
 
 
278 aa  120  3e-26  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0326  nitrate transport permease  32.29 
 
 
295 aa  120  3e-26  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0254  binding-protein dependent transport system inner membrane protein  30.71 
 
 
279 aa  119  3.9999999999999996e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.57663 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
285 aa  119  3.9999999999999996e-26  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_008825  Mpe_A1391  NO3-/NO2- ABC transporter  32.16 
 
 
305 aa  119  4.9999999999999996e-26  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.36361 
 
 
-
 
NC_013889  TK90_0963  nitrate ABC transporter, inner membrane subunit  35.8 
 
 
281 aa  119  4.9999999999999996e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.563275 
 
 
-
 
NC_013422  Hneap_2205  nitrate ABC transporter, inner membrane subunit  35.03 
 
 
280 aa  119  4.9999999999999996e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  36.16 
 
 
283 aa  119  6e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0276  nitrate transport permease  32.64 
 
 
303 aa  119  6e-26  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.21823 
 
 
-
 
NC_009439  Pmen_2104  nitrate ABC transporter, inner membrane subunit  33.51 
 
 
283 aa  118  9e-26  Pseudomonas mendocina ymp  Bacteria  normal  0.0291571  normal  0.0240092 
 
 
-
 
NC_011992  Dtpsy_2321  nitrate ABC transporter, inner membrane subunit  32.81 
 
 
313 aa  118  9e-26  Acidovorax ebreus TPSY  Bacteria  normal  0.539996  n/a   
 
 
-
 
NC_010524  Lcho_3842  nitrate ABC transporter, inner membrane subunit  31.41 
 
 
331 aa  117  9.999999999999999e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008782  Ajs_2832  nitrate ABC transporter, inner membrane subunit  32.81 
 
 
313 aa  118  9.999999999999999e-26  Acidovorax sp. JS42  Bacteria  normal  normal  0.442547 
 
 
-
 
NC_009636  Smed_1127  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
267 aa  118  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  35.64 
 
 
274 aa  117  1.9999999999999998e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_1542  nitrate ABC transporter, inner membrane subunit  31.65 
 
 
304 aa  117  1.9999999999999998e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  0.244375  n/a   
 
 
-
 
NC_013889  TK90_0666  nitrate ABC transporter, inner membrane subunit  33.19 
 
 
311 aa  116  3.9999999999999997e-25  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.0569164  decreased coverage  0.0039857 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
277 aa  116  5e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007948  Bpro_3268  nitrate transport permease  32.81 
 
 
328 aa  115  5e-25  Polaromonas sp. JS666  Bacteria  normal  0.321419  normal 
 
 
-
 
NC_008688  Pden_5005  binding-protein-dependent transport systems inner membrane component  29.17 
 
 
289 aa  116  5e-25  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0255  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
279 aa  115  6e-25  Pseudomonas putida GB-1  Bacteria  normal  0.796344  normal 
 
 
-
 
NC_007347  Reut_A0329  nitrate transport permease  35.08 
 
 
300 aa  115  6.9999999999999995e-25  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3299  putative sulfonate ABC transporter, permease protein  31.46 
 
 
286 aa  115  7.999999999999999e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.201269  normal  0.262094 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
273 aa  115  1.0000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2882  binding-protein-dependent transport systems inner membrane component  30.84 
 
 
268 aa  114  1.0000000000000001e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.80309  n/a   
 
 
-
 
NC_011832  Mpal_1076  binding-protein-dependent transport systems inner membrane component  32.66 
 
 
269 aa  114  1.0000000000000001e-24  Methanosphaerula palustris E1-9c  Archaea  normal  0.406887  normal  0.454808 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
265 aa  114  1.0000000000000001e-24  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
264 aa  114  1.0000000000000001e-24  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  31.55 
 
 
273 aa  114  1.0000000000000001e-24  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
273 aa  115  1.0000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_008781  Pnap_1413  nitrate ABC transporter, inner membrane subunit  31.77 
 
 
311 aa  114  1.0000000000000001e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  32.12 
 
 
322 aa  114  2.0000000000000002e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_004578  PSPTO_5321  taurine ABC transporter, permease protein  31.48 
 
 
285 aa  114  2.0000000000000002e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  35.88 
 
 
277 aa  114  2.0000000000000002e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
265 aa  114  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_011146  Gbem_1734  binding-protein-dependent transport systems inner membrane component  32.59 
 
 
252 aa  114  2.0000000000000002e-24  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
265 aa  114  2.0000000000000002e-24  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_008825  Mpe_A0924  ABC transporter permease protein  34.59 
 
 
258 aa  114  2.0000000000000002e-24  Methylibium petroleiphilum PM1  Bacteria  normal  0.175022  normal 
 
 
-
 
NC_014150  Bmur_2553  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
275 aa  114  2.0000000000000002e-24  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  30.43 
 
 
264 aa  113  3e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
259 aa  113  3e-24  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_012880  Dd703_2496  nitrate ABC transporter, inner membrane subunit  32.29 
 
 
304 aa  113  3e-24  Dickeya dadantii Ech703  Bacteria  normal  0.546285  n/a   
 
 
-
 
NC_007413  Ava_3654  nitrate transport permease  28.57 
 
 
273 aa  113  3e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  33.68 
 
 
269 aa  113  3e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  30.52 
 
 
265 aa  113  4.0000000000000004e-24  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
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