More than 300 homologs were found in PanDaTox collection
for query gene Rpal_2953 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_2953  binding-protein-dependent transport systems inner membrane component  100 
 
 
294 aa  573  1.0000000000000001e-162  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2837  binding-protein dependent transport system inner membrane protein  91.73 
 
 
266 aa  459  9.999999999999999e-129  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.115716  normal 
 
 
-
 
NC_010511  M446_0397  binding-protein-dependent transport systems inner membrane component  63.81 
 
 
285 aa  308  8e-83  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.987071 
 
 
-
 
NC_010505  Mrad2831_4568  binding-protein-dependent transport systems inner membrane component  63.42 
 
 
286 aa  305  7e-82  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1261  binding-protein-dependent transport systems inner membrane component  64.23 
 
 
293 aa  295  7e-79  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.113651  normal 
 
 
-
 
NC_013521  Sked_16930  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  49.61 
 
 
322 aa  229  5e-59  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.327  normal  0.410158 
 
 
-
 
NC_011887  Mnod_7932  binding-protein-dependent transport systems inner membrane component  41.58 
 
 
283 aa  188  7e-47  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0735  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  40.53 
 
 
273 aa  181  2e-44  Burkholderia xenovorans LB400  Bacteria  normal  0.714635  normal 
 
 
-
 
NC_009485  BBta_6545  ABC transporter permease  44.44 
 
 
269 aa  177  2e-43  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.276106 
 
 
-
 
NC_010511  M446_0464  binding-protein-dependent transport systems inner membrane component  46.04 
 
 
288 aa  177  2e-43  Methylobacterium sp. 4-46  Bacteria  normal  0.349721  hitchhiker  0.00645779 
 
 
-
 
NC_009675  Anae109_3869  binding-protein-dependent transport systems inner membrane component  40.15 
 
 
274 aa  169  8e-41  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4051  binding-protein-dependent transport systems inner membrane component  39.1 
 
 
273 aa  167  1e-40  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.395379 
 
 
-
 
NC_007298  Daro_2152  binding-protein dependent transport system inner membrane protein  36.94 
 
 
271 aa  167  2e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.529987 
 
 
-
 
NC_009634  Mevan_0512  binding-protein-dependent transport systems inner membrane component  38.87 
 
 
253 aa  167  2.9999999999999998e-40  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_010172  Mext_1261  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
273 aa  164  1.0000000000000001e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.306936 
 
 
-
 
NC_011757  Mchl_1422  binding-protein-dependent transport systems inner membrane component  37.88 
 
 
273 aa  164  1.0000000000000001e-39  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1211  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
273 aa  163  3e-39  Methylobacterium populi BJ001  Bacteria  normal  0.132759  normal  0.452833 
 
 
-
 
NC_009635  Maeo_0992  binding-protein-dependent transport systems inner membrane component  41.58 
 
 
254 aa  159  4e-38  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007005  Psyr_2515  binding-protein dependent transport system inner membrane protein  35.14 
 
 
282 aa  159  5e-38  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.313862  normal 
 
 
-
 
NC_004578  PSPTO_2787  ABC transporter, permease protein  36.58 
 
 
282 aa  159  6e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0328614  n/a   
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
255 aa  158  1e-37  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_007952  Bxe_B2638  ABC sulfonate transporter, inner membrane subunit  31.65 
 
 
279 aa  155  7e-37  Burkholderia xenovorans LB400  Bacteria  normal  0.0950643  hitchhiker  0.0000361652 
 
 
-
 
NC_011894  Mnod_5146  binding-protein-dependent transport systems inner membrane component  39.22 
 
 
277 aa  153  2.9999999999999998e-36  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_008554  Sfum_2216  binding-protein-dependent transport systems inner membrane component  45.21 
 
 
314 aa  152  5.9999999999999996e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.82677  normal  0.484673 
 
 
-
 
NC_009135  MmarC5_0393  binding-protein-dependent transport systems inner membrane component  39.68 
 
 
253 aa  151  1e-35  Methanococcus maripaludis C5  Archaea  normal  0.0876322  n/a   
 
 
-
 
NC_007953  Bxe_C0981  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.58 
 
 
279 aa  151  1e-35  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  33.22 
 
 
283 aa  151  1e-35  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
NC_007948  Bpro_2935  binding-protein-dependent transport systems inner membrane component  37.08 
 
 
252 aa  150  2e-35  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009975  MmarC6_1476  binding-protein-dependent transport systems inner membrane component  44.5 
 
 
253 aa  149  4e-35  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
277 aa  149  6e-35  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_007644  Moth_1982  binding-protein dependent transport system inner membrane protein  39.41 
 
 
266 aa  149  6e-35  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.187248  normal 
 
 
-
 
NC_009832  Spro_1736  binding-protein-dependent transport systems inner membrane component  34.94 
 
 
264 aa  149  7e-35  Serratia proteamaculans 568  Bacteria  normal  0.440066  normal  0.144233 
 
 
-
 
NC_012917  PC1_0024  binding-protein-dependent transport systems inner membrane component  34.8 
 
 
264 aa  149  7e-35  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A3058  taurine ABC transporter, permease protein  35.44 
 
 
274 aa  149  8e-35  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0030  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
264 aa  149  8e-35  Pectobacterium wasabiae WPP163  Bacteria  normal  0.050552  n/a   
 
 
-
 
NC_009637  MmarC7_0444  binding-protein-dependent transport systems inner membrane component  43.5 
 
 
253 aa  148  1.0000000000000001e-34  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_007492  Pfl01_3295  binding-protein dependent transport system inner membrane protein  35.43 
 
 
279 aa  148  1.0000000000000001e-34  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3891  binding-protein-dependent transport systems inner membrane component  40.47 
 
 
269 aa  148  1.0000000000000001e-34  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4508  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
277 aa  148  1.0000000000000001e-34  Methylobacterium sp. 4-46  Bacteria  normal  0.854714  normal  0.909107 
 
 
-
 
NC_012880  Dd703_1642  binding-protein-dependent transport systems inner membrane component  34.82 
 
 
263 aa  147  2.0000000000000003e-34  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_1485  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
270 aa  147  2.0000000000000003e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3750  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  40.47 
 
 
269 aa  147  2.0000000000000003e-34  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1539  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
270 aa  147  2.0000000000000003e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0890555  normal 
 
 
-
 
NC_011981  Avi_7221  ABC transporter membrane spanning protein (nitrate/sulfonates)  33.46 
 
 
282 aa  147  2.0000000000000003e-34  Agrobacterium vitis S4  Bacteria  normal  0.735165  n/a   
 
 
-
 
NC_011145  AnaeK_3807  binding-protein-dependent transport systems inner membrane component  40.08 
 
 
269 aa  147  3e-34  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1083  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
270 aa  147  3e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1464  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
270 aa  147  3e-34  Burkholderia ambifaria AMMD  Bacteria  normal  0.0183453  n/a   
 
 
-
 
NC_008542  Bcen2424_1563  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
270 aa  147  3e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_1076  binding-protein-dependent transport systems inner membrane component  35.36 
 
 
269 aa  146  4.0000000000000006e-34  Methanosphaerula palustris E1-9c  Archaea  normal  0.406887  normal  0.454808 
 
 
-
 
NC_007510  Bcep18194_A4705  nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein  34.26 
 
 
270 aa  146  4.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1673  binding-protein-dependent transport systems inner membrane component  34.68 
 
 
263 aa  145  6e-34  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
281 aa  145  9e-34  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  35.34 
 
 
259 aa  144  1e-33  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_009483  Gura_3884  binding-protein-dependent transport systems inner membrane component  34.36 
 
 
258 aa  144  1e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1669  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
273 aa  144  1e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.5369  normal  0.169212 
 
 
-
 
NC_009485  BBta_3299  putative sulfonate ABC transporter, permease protein  33.45 
 
 
286 aa  144  2e-33  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.201269  normal  0.262094 
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  40.4 
 
 
282 aa  143  3e-33  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0768  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
286 aa  143  3e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.113876 
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  40.4 
 
 
282 aa  143  3e-33  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0114  binding-protein-dependent transport systems inner membrane component  36.29 
 
 
286 aa  143  3e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.703431 
 
 
-
 
NC_010501  PputW619_4973  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
265 aa  143  3e-33  Pseudomonas putida W619  Bacteria  normal  0.0722896  normal  0.022026 
 
 
-
 
NC_008062  Bcen_6102  binding-protein-dependent transport systems inner membrane component  40.36 
 
 
291 aa  144  3e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_1975  binding-protein-dependent transport systems inner membrane component  40.36 
 
 
291 aa  144  3e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  0.690359  n/a   
 
 
-
 
NC_009512  Pput_0254  binding-protein-dependent transport systems inner membrane component  34.85 
 
 
265 aa  143  4e-33  Pseudomonas putida F1  Bacteria  normal  0.293544  normal  0.0445843 
 
 
-
 
NC_009656  PSPA7_1679  ABC transporter permease  34.72 
 
 
274 aa  143  4e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.451747  n/a   
 
 
-
 
NC_007347  Reut_A1975  binding-protein dependent transport system inner membrane protein  35.42 
 
 
267 aa  142  5e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.59364  n/a   
 
 
-
 
NC_011757  Mchl_4201  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
305 aa  142  5e-33  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1974  binding-protein dependent transport system inner membrane protein  40.8 
 
 
261 aa  142  5e-33  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.000000226251  normal 
 
 
-
 
NC_012850  Rleg_3008  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
280 aa  142  6e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_19510  ABC transporter permease  34.72 
 
 
274 aa  142  6e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_3464  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
294 aa  142  6e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  0.136656  normal 
 
 
-
 
NC_012791  Vapar_2975  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
284 aa  142  6e-33  Variovorax paradoxus S110  Bacteria  normal  0.27836  n/a   
 
 
-
 
NC_008825  Mpe_A0924  ABC transporter permease protein  36.59 
 
 
258 aa  142  6e-33  Methylibium petroleiphilum PM1  Bacteria  normal  0.175022  normal 
 
 
-
 
NC_002947  PP_0239  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
265 aa  142  7e-33  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00756787 
 
 
-
 
NC_012850  Rleg_2304  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
278 aa  142  7e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.37818 
 
 
-
 
NC_006274  BCZK2748  sulfonate/taurine ABC transporter permease  37.75 
 
 
274 aa  142  8e-33  Bacillus cereus E33L  Bacteria  normal  0.947189  n/a   
 
 
-
 
NC_009708  YpsIP31758_0355  putative ABC aliphatic sulfonates transporter, permease subunit  33.6 
 
 
264 aa  142  8e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0423  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
264 aa  142  8e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1473  binding-protein dependent transport system inner membrane protein  33.33 
 
 
306 aa  141  9.999999999999999e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0411979  normal 
 
 
-
 
NC_009436  Ent638_1453  alkanesulfonate transporter permease subunit  33.47 
 
 
263 aa  141  9.999999999999999e-33  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3060  taurine ABC transporter, permease protein  37.25 
 
 
274 aa  140  1.9999999999999998e-32  Bacillus cereus ATCC 10987  Bacteria  normal  0.0244271  n/a   
 
 
-
 
NC_010322  PputGB1_0263  binding-protein-dependent transport systems inner membrane component  34.47 
 
 
265 aa  140  1.9999999999999998e-32  Pseudomonas putida GB-1  Bacteria  normal  0.791848  normal 
 
 
-
 
NC_010465  YPK_1957  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
273 aa  141  1.9999999999999998e-32  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1848  ABC transporter permease  37.5 
 
 
273 aa  141  1.9999999999999998e-32  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_19570  ABC transporter permease  33.84 
 
 
262 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5468  ABC transporter membrane spanning protein (aliphatic sulphonate)  34.62 
 
 
284 aa  140  1.9999999999999998e-32  Agrobacterium vitis S4  Bacteria  normal  0.165676  n/a   
 
 
-
 
NC_012856  Rpic12D_1279  binding-protein-dependent transport systems inner membrane component  36.86 
 
 
272 aa  140  3e-32  Ralstonia pickettii 12D  Bacteria  normal  0.88893  normal  0.0504928 
 
 
-
 
NC_007951  Bxe_A2492  ABC aliphatic sulfonates transporter, innermembrane subunit  34.66 
 
 
280 aa  140  3e-32  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.773133 
 
 
-
 
NC_010622  Bphy_1648  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
283 aa  140  3e-32  Burkholderia phymatum STM815  Bacteria  normal  0.189471  normal  0.0804385 
 
 
-
 
NC_007413  Ava_4139  binding-protein dependent transport system inner membrane protein  35.86 
 
 
275 aa  139  3.9999999999999997e-32  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.00000000314222  normal  0.0106036 
 
 
-
 
NC_011757  Mchl_3671  binding-protein-dependent transport systems inner membrane component  41.21 
 
 
287 aa  139  3.9999999999999997e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0347715  normal 
 
 
-
 
NC_010725  Mpop_4185  binding-protein-dependent transport systems inner membrane component  41.62 
 
 
283 aa  139  3.9999999999999997e-32  Methylobacterium populi BJ001  Bacteria  normal  0.321257  normal 
 
 
-
 
NC_010172  Mext_3346  binding-protein-dependent transport systems inner membrane component  41.21 
 
 
291 aa  139  3.9999999999999997e-32  Methylobacterium extorquens PA1  Bacteria  normal  0.252204  normal 
 
 
-
 
NC_010681  Bphyt_1745  binding-protein-dependent transport systems inner membrane component  32.99 
 
 
280 aa  139  3.9999999999999997e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0208  nitrate ABC transporter, permease protein, putative  38.16 
 
 
260 aa  139  4.999999999999999e-32  Pseudomonas putida KT2440  Bacteria  normal  normal  0.473726 
 
 
-
 
NC_007973  Rmet_1372  binding-protein-dependent transport systems inner membrane component  36.03 
 
 
268 aa  139  4.999999999999999e-32  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_1684  ABC transporter permease  33.84 
 
 
262 aa  139  6e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3818  binding-protein-dependent transport systems inner membrane component  34.78 
 
 
280 aa  139  6e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.615395  normal  0.42897 
 
 
-
 
NC_011004  Rpal_2894  binding-protein-dependent transport systems inner membrane component  35.37 
 
 
280 aa  139  7e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.42556  n/a   
 
 
-
 
NC_009720  Xaut_2085  binding-protein-dependent transport systems inner membrane component  36.6 
 
 
319 aa  139  7e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0787698 
 
 
-
 
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