More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4001 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0413  binding-protein-dependent transport systems inner membrane component  79.71 
 
 
415 aa  637    Pseudomonas putida KT2440  Bacteria  normal  0.155483  normal 
 
 
-
 
NC_009439  Pmen_4001  binding-protein-dependent transport systems inner membrane component  100 
 
 
415 aa  827    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0749  polyamine ABC transporter permease  82.89 
 
 
415 aa  668    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0564  polyamine ABC transporter, permease protein  78.8 
 
 
415 aa  643    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0444  binding-protein-dependent transport systems inner membrane component  79.47 
 
 
415 aa  636    Pseudomonas putida GB-1  Bacteria  normal  normal  0.382081 
 
 
-
 
NC_007005  Psyr_4613  binding-protein dependent transport system inner membrane protein  78.07 
 
 
415 aa  638    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.993847 
 
 
-
 
NC_007492  Pfl01_5123  binding-protein dependent transport system inner membrane protein  79.23 
 
 
415 aa  645    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0230497  normal  0.706395 
 
 
-
 
NC_010501  PputW619_4789  binding-protein-dependent transport systems inner membrane component  80.92 
 
 
415 aa  649    Pseudomonas putida W619  Bacteria  normal  normal  0.966966 
 
 
-
 
NC_008463  PA14_07890  putative permease of ABC transporter  83.61 
 
 
415 aa  660    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00567527 
 
 
-
 
NC_009512  Pput_0447  binding-protein-dependent transport systems inner membrane component  79.23 
 
 
415 aa  634  1e-180  Pseudomonas putida F1  Bacteria  normal  normal  0.328312 
 
 
-
 
NC_010552  BamMC406_3814  binding-protein-dependent transport systems inner membrane component  60.3 
 
 
420 aa  466  9.999999999999999e-131  Burkholderia ambifaria MC40-6  Bacteria  normal  0.156739  normal 
 
 
-
 
NC_008543  Bcen2424_3920  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  1e-129  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2168  ABC spermidine/putrescine transporter, inner membrane subunit  60.1 
 
 
418 aa  462  1e-129  Burkholderia sp. 383  Bacteria  normal  0.0193763  normal 
 
 
-
 
NC_007952  Bxe_B2931  spermidine/putrescine ABC transporter inner membrane protein  57.7 
 
 
422 aa  462  1e-129  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4446  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  1e-129  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.126385  n/a   
 
 
-
 
NC_010515  Bcenmc03_3607  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  1e-129  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3298  binding-protein-dependent transport systems inner membrane component  60.05 
 
 
420 aa  464  1e-129  Burkholderia ambifaria AMMD  Bacteria  normal  0.753859  normal 
 
 
-
 
NC_010086  Bmul_4663  binding-protein-dependent transport systems inner membrane component  58.84 
 
 
446 aa  461  9.999999999999999e-129  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0108621  normal 
 
 
-
 
NC_007650  BTH_II0644  spermidine/putrescine ABC transporter, permease protein  59.37 
 
 
419 aa  459  9.999999999999999e-129  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6886  binding-protein-dependent transport systems inner membrane component  57.46 
 
 
425 aa  458  9.999999999999999e-129  Burkholderia phytofirmans PsJN  Bacteria  normal  0.653272  normal  0.230244 
 
 
-
 
NC_009075  BURPS668_A2499  putative polyamine ABC transporter, permease protein  58.88 
 
 
419 aa  455  1e-127  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0484  spermidine/putrescine ABC transporter, permease protein  58.88 
 
 
419 aa  454  1.0000000000000001e-126  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0433  spermidine/putrescine ABC transporter, permease protein  58.88 
 
 
419 aa  454  1.0000000000000001e-126  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0813  spermidine/putrescine ABC transporter, permease protein  58.88 
 
 
419 aa  454  1.0000000000000001e-126  Burkholderia pseudomallei 1710b  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2360  putative polyamine ABC transporter, permease protein  58.88 
 
 
419 aa  454  1.0000000000000001e-126  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1813  spermidine/putrescine ABC transporter, permease protein  58.88 
 
 
419 aa  454  1.0000000000000001e-126  Burkholderia mallei NCTC 10229  Bacteria  normal  0.574113  n/a   
 
 
-
 
NC_011662  Tmz1t_0426  binding-protein-dependent transport systems inner membrane component  59.81 
 
 
424 aa  454  1.0000000000000001e-126  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5430  binding-protein-dependent transport systems inner membrane component  59.05 
 
 
462 aa  451  1e-125  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.105452 
 
 
-
 
NC_010623  Bphy_4323  binding-protein-dependent transport systems inner membrane component  58.33 
 
 
423 aa  451  1e-125  Burkholderia phymatum STM815  Bacteria  normal  normal  0.554758 
 
 
-
 
NC_010682  Rpic_1469  binding-protein-dependent transport systems inner membrane component  57.52 
 
 
422 aa  447  1.0000000000000001e-124  Ralstonia pickettii 12J  Bacteria  normal  0.633443  hitchhiker  0.0000000331128 
 
 
-
 
NC_012856  Rpic12D_1520  binding-protein-dependent transport systems inner membrane component  56.99 
 
 
422 aa  444  1e-123  Ralstonia pickettii 12D  Bacteria  normal  0.030853  normal  0.984041 
 
 
-
 
NC_012912  Dd1591_1870  binding-protein-dependent transport systems inner membrane component  55.44 
 
 
423 aa  432  1e-120  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1787  binding-protein-dependent transport systems inner membrane component  53.77 
 
 
423 aa  429  1e-119  Dickeya dadantii Ech703  Bacteria  normal  0.229456  n/a   
 
 
-
 
NC_012917  PC1_2229  binding-protein-dependent transport systems inner membrane component  53.85 
 
 
422 aa  425  1e-118  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.838973  n/a   
 
 
-
 
NC_003295  RSc1732  transport system permease transmembrane protein  60.25 
 
 
420 aa  423  1e-117  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0286401  normal 
 
 
-
 
NC_013421  Pecwa_2542  binding-protein-dependent transport systems inner membrane component  54.48 
 
 
422 aa  424  1e-117  Pectobacterium wasabiae WPP163  Bacteria  normal  0.275923  n/a   
 
 
-
 
NC_007948  Bpro_2915  binding-protein-dependent transport systems inner membrane component  55.47 
 
 
416 aa  424  1e-117  Polaromonas sp. JS666  Bacteria  normal  0.187641  normal 
 
 
-
 
NC_012791  Vapar_4698  binding-protein-dependent transport systems inner membrane component  55.85 
 
 
418 aa  417  9.999999999999999e-116  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3471  ABC spermidine/putrescine transporter, innermembrane subunit  50.89 
 
 
417 aa  412  1e-114  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.60984 
 
 
-
 
NC_010681  Bphyt_2373  binding-protein-dependent transport systems inner membrane component  51.25 
 
 
417 aa  413  1e-114  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0595  binding-protein-dependent transport systems inner membrane component  56.76 
 
 
413 aa  406  1.0000000000000001e-112  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2046  binding-protein dependent transport system inner membrane protein  55.97 
 
 
406 aa  402  1e-111  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.480866  n/a   
 
 
-
 
NC_010159  YpAngola_A3108  spermidine/putrescine ABC transporter permease  53.56 
 
 
421 aa  399  9.999999999999999e-111  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1337  binding-protein-dependent transport systems inner membrane component  53.56 
 
 
421 aa  400  9.999999999999999e-111  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1220  spermidine/putrescine ABC transporter, permease protein  53.56 
 
 
421 aa  401  9.999999999999999e-111  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6037  binding-protein-dependent transport systems inner membrane component  51.34 
 
 
421 aa  393  1e-108  Burkholderia phymatum STM815  Bacteria  normal  0.356927  normal  0.017991 
 
 
-
 
NC_008781  Pnap_2633  binding-protein-dependent transport systems inner membrane component  53.55 
 
 
423 aa  387  1e-106  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.252621  normal 
 
 
-
 
NC_013456  VEA_003667  putative permease of ABC transporter  49.25 
 
 
426 aa  384  1e-105  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2381  binding-protein-dependent transport systems inner membrane component  50.67 
 
 
420 aa  374  1e-102  Burkholderia phymatum STM815  Bacteria  normal  0.916996  normal 
 
 
-
 
NC_008391  Bamb_4295  binding-protein-dependent transport systems inner membrane component  49 
 
 
420 aa  372  1e-102  Burkholderia ambifaria AMMD  Bacteria  normal  0.193876  normal 
 
 
-
 
NC_008786  Veis_4043  binding-protein-dependent transport systems inner membrane component  55.01 
 
 
527 aa  340  2e-92  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2150  binding-protein-dependent transport systems inner membrane component  50.66 
 
 
433 aa  339  5e-92  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3461  binding-protein-dependent transport systems inner membrane component  50.66 
 
 
430 aa  339  5e-92  Paracoccus denitrificans PD1222  Bacteria  normal  0.881992  normal 
 
 
-
 
NC_010627  Bphy_7800  binding-protein-dependent transport systems inner membrane component  44.83 
 
 
424 aa  336  3.9999999999999995e-91  Burkholderia phymatum STM815  Bacteria  normal  0.370122  normal 
 
 
-
 
NC_009428  Rsph17025_0668  binding-protein-dependent transport systems inner membrane component  46.03 
 
 
424 aa  334  2e-90  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00457285 
 
 
-
 
NC_004311  BRA0328  spermidine/putrescine ABC transporter, permease protein, putative  44.82 
 
 
412 aa  328  8e-89  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0468  binding-protein-dependent transport systems inner membrane component  43.04 
 
 
416 aa  322  7e-87  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4202  binding-protein-dependent transport systems inner membrane component  47 
 
 
411 aa  320  3.9999999999999996e-86  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0532  binding-protein-dependent transport systems inner membrane component  47.06 
 
 
424 aa  316  4e-85  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.686624  normal 
 
 
-
 
NC_007493  RSP_1884  ABC polyamine/opine transporter, inner membrane subunit  47.06 
 
 
424 aa  309  6.999999999999999e-83  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.343799  n/a   
 
 
-
 
NC_009668  Oant_3715  binding-protein-dependent transport systems inner membrane component  44.09 
 
 
391 aa  304  2.0000000000000002e-81  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011370  Rleg2_6320  binding-protein-dependent transport systems inner membrane component  42.93 
 
 
414 aa  292  8e-78  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_4106  binding-protein-dependent transport systems inner membrane component  44.27 
 
 
389 aa  286  4e-76  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1612  spermidine/putrescine ABC transporter permease  41.58 
 
 
392 aa  276  4e-73  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2989  binding-protein-dependent transport systems inner membrane component  50.7 
 
 
541 aa  274  2.0000000000000002e-72  Ruegeria sp. TM1040  Bacteria  normal  0.263811  normal  0.821949 
 
 
-
 
NC_009636  Smed_1717  binding-protein-dependent transport systems inner membrane component  42.55 
 
 
393 aa  274  2.0000000000000002e-72  Sinorhizobium medicae WSM419  Bacteria  normal  0.25226  normal 
 
 
-
 
NC_007802  Jann_1269  binding-protein-dependent transport systems inner membrane component  51.58 
 
 
557 aa  249  9e-65  Jannaschia sp. CCS1  Bacteria  normal  0.347255  normal  0.330105 
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  46.63 
 
 
302 aa  193  4e-48  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  44.75 
 
 
301 aa  191  2.9999999999999997e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  44.75 
 
 
301 aa  190  4e-47  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_6114  binding-protein-dependent transport systems inner membrane component  40.81 
 
 
294 aa  187  4e-46  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.132934  normal 
 
 
-
 
NC_011368  Rleg2_5590  binding-protein-dependent transport systems inner membrane component  42.74 
 
 
290 aa  180  4.999999999999999e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3242  binding-protein dependent transport system inner membrane protein  39.2 
 
 
314 aa  180  4.999999999999999e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.549497  normal  0.829711 
 
 
-
 
NC_004311  BRA1106  polyamine ABC transporter, permease protein, putative  42.71 
 
 
271 aa  177  2e-43  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3648  binding-protein-dependent transport systems inner membrane component  46.23 
 
 
288 aa  176  5e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2485  binding-protein-dependent transport systems inner membrane component  41.71 
 
 
283 aa  176  5e-43  Marinomonas sp. MWYL1  Bacteria  normal  0.0734345  normal 
 
 
-
 
NC_011894  Mnod_4262  binding-protein-dependent transport systems inner membrane component  41.52 
 
 
593 aa  176  9e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4994  binding-protein-dependent transport systems inner membrane component  42.01 
 
 
290 aa  175  9.999999999999999e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1937  binding-protein-dependent transport systems inner membrane component  42.29 
 
 
606 aa  175  1.9999999999999998e-42  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6248  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
291 aa  174  2.9999999999999996e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.358621 
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  39.46 
 
 
597 aa  173  5.999999999999999e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6543  binding-protein-dependent transport systems inner membrane component  40.55 
 
 
290 aa  172  6.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.548122  normal  0.277874 
 
 
-
 
NC_010501  PputW619_1934  binding-protein-dependent transport systems inner membrane component  39.57 
 
 
305 aa  171  2e-41  Pseudomonas putida W619  Bacteria  normal  normal  0.0157506 
 
 
-
 
NC_011988  Avi_6090  ABC transporter membrane spanning protein (polyamine)  41.44 
 
 
300 aa  171  3e-41  Agrobacterium vitis S4  Bacteria  normal  0.467049  n/a   
 
 
-
 
NC_009512  Pput_1954  binding-protein-dependent transport systems inner membrane component  42.18 
 
 
305 aa  170  3e-41  Pseudomonas putida F1  Bacteria  normal  0.336194  normal  0.870065 
 
 
-
 
NC_002947  PP_3815  binding-protein-dependent transport systems inner membrane component  42.18 
 
 
305 aa  169  7e-41  Pseudomonas putida KT2440  Bacteria  normal  0.972091  normal  0.192229 
 
 
-
 
NC_010322  PputGB1_2090  binding-protein-dependent transport systems inner membrane component  42.18 
 
 
305 aa  169  8e-41  Pseudomonas putida GB-1  Bacteria  normal  0.394579  normal 
 
 
-
 
NC_007434  BURPS1710b_2210  ABC transporter, membrane spanning protein (polyamine)  41.26 
 
 
294 aa  167  2.9999999999999998e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0568314  n/a   
 
 
-
 
NC_014165  Tbis_1589  binding-protein-dependent transporter inner membrane component  43.22 
 
 
303 aa  165  2.0000000000000002e-39  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0639141 
 
 
-
 
NC_004578  PSPTO_2666  spermidine/putrescine ABC transporter, permease protein, putative  38.8 
 
 
284 aa  163  5.0000000000000005e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0393724  n/a   
 
 
-
 
NC_010511  M446_3857  binding-protein-dependent transport systems inner membrane component  44.28 
 
 
277 aa  163  5.0000000000000005e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_3865  binding-protein-dependent transport systems inner membrane component  36.26 
 
 
283 aa  163  5.0000000000000005e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.783769  normal 
 
 
-
 
NC_007005  Psyr_2400  binding-protein dependent transport system inner membrane protein  38 
 
 
318 aa  163  6e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0272456  normal  0.898727 
 
 
-
 
NC_009656  PSPA7_0394  polyamine transport protein PotH  40.59 
 
 
303 aa  162  1e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  0.72562  n/a   
 
 
-
 
NC_013510  Tcur_0447  binding-protein-dependent transport systems inner membrane component  41.75 
 
 
301 aa  160  3e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_04240  putative permease of ABC transporter  40.47 
 
 
309 aa  160  3e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3448  binding-protein-dependent transport systems inner membrane component  40.84 
 
 
298 aa  161  3e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.420206 
 
 
-
 
NC_009636  Smed_0312  binding-protein-dependent transport systems inner membrane component  40.47 
 
 
303 aa  160  4e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.696873  normal 
 
 
-
 
NC_011729  PCC7424_3605  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
295 aa  160  4e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0391464 
 
 
-
 
NC_008463  PA14_03950  polyamine transport protein PotH  39.9 
 
 
293 aa  160  4e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>