More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_0444 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0413  binding-protein-dependent transport systems inner membrane component  98.55 
 
 
415 aa  824    Pseudomonas putida KT2440  Bacteria  normal  0.155483  normal 
 
 
-
 
NC_004578  PSPTO_0564  polyamine ABC transporter, permease protein  88.19 
 
 
415 aa  707    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_4789  binding-protein-dependent transport systems inner membrane component  96.63 
 
 
415 aa  747    Pseudomonas putida W619  Bacteria  normal  normal  0.966966 
 
 
-
 
NC_007005  Psyr_4613  binding-protein dependent transport system inner membrane protein  87.23 
 
 
415 aa  701    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.993847 
 
 
-
 
NC_010322  PputGB1_0444  binding-protein-dependent transport systems inner membrane component  100 
 
 
415 aa  833    Pseudomonas putida GB-1  Bacteria  normal  normal  0.382081 
 
 
-
 
NC_007492  Pfl01_5123  binding-protein dependent transport system inner membrane protein  89.88 
 
 
415 aa  723    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0230497  normal  0.706395 
 
 
-
 
NC_009656  PSPA7_0749  polyamine ABC transporter permease  83.09 
 
 
415 aa  667    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0447  binding-protein-dependent transport systems inner membrane component  98.31 
 
 
415 aa  822    Pseudomonas putida F1  Bacteria  normal  normal  0.328312 
 
 
-
 
NC_009439  Pmen_4001  binding-protein-dependent transport systems inner membrane component  79.47 
 
 
415 aa  635    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_07890  putative permease of ABC transporter  82.61 
 
 
415 aa  655    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00567527 
 
 
-
 
NC_010552  BamMC406_3814  binding-protein-dependent transport systems inner membrane component  61.06 
 
 
420 aa  471  1.0000000000000001e-131  Burkholderia ambifaria MC40-6  Bacteria  normal  0.156739  normal 
 
 
-
 
NC_007511  Bcep18194_B2168  ABC spermidine/putrescine transporter, inner membrane subunit  60.61 
 
 
418 aa  469  1.0000000000000001e-131  Burkholderia sp. 383  Bacteria  normal  0.0193763  normal 
 
 
-
 
NC_007952  Bxe_B2931  spermidine/putrescine ABC transporter inner membrane protein  58.13 
 
 
422 aa  469  1.0000000000000001e-131  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3298  binding-protein-dependent transport systems inner membrane component  60.8 
 
 
420 aa  468  1.0000000000000001e-131  Burkholderia ambifaria AMMD  Bacteria  normal  0.753859  normal 
 
 
-
 
NC_010515  Bcenmc03_3607  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  9.999999999999999e-131  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4663  binding-protein-dependent transport systems inner membrane component  60.1 
 
 
446 aa  468  9.999999999999999e-131  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0108621  normal 
 
 
-
 
NC_007650  BTH_II0644  spermidine/putrescine ABC transporter, permease protein  62.63 
 
 
419 aa  468  9.999999999999999e-131  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4446  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  9.999999999999999e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.126385  n/a   
 
 
-
 
NC_010676  Bphyt_6886  binding-protein-dependent transport systems inner membrane component  59.51 
 
 
425 aa  468  9.999999999999999e-131  Burkholderia phytofirmans PsJN  Bacteria  normal  0.653272  normal  0.230244 
 
 
-
 
NC_008543  Bcen2424_3920  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  464  9.999999999999999e-131  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A0484  spermidine/putrescine ABC transporter, permease protein  62.12 
 
 
419 aa  463  1e-129  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0433  spermidine/putrescine ABC transporter, permease protein  62.12 
 
 
419 aa  463  1e-129  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2360  putative polyamine ABC transporter, permease protein  62.12 
 
 
419 aa  463  1e-129  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0813  spermidine/putrescine ABC transporter, permease protein  62.12 
 
 
419 aa  463  1e-129  Burkholderia pseudomallei 1710b  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_008835  BMA10229_1813  spermidine/putrescine ABC transporter, permease protein  62.12 
 
 
419 aa  463  1e-129  Burkholderia mallei NCTC 10229  Bacteria  normal  0.574113  n/a   
 
 
-
 
NC_009075  BURPS668_A2499  putative polyamine ABC transporter, permease protein  62.12 
 
 
419 aa  464  1e-129  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5430  binding-protein-dependent transport systems inner membrane component  59.66 
 
 
462 aa  459  9.999999999999999e-129  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.105452 
 
 
-
 
NC_010623  Bphy_4323  binding-protein-dependent transport systems inner membrane component  59.8 
 
 
423 aa  461  9.999999999999999e-129  Burkholderia phymatum STM815  Bacteria  normal  normal  0.554758 
 
 
-
 
NC_010682  Rpic_1469  binding-protein-dependent transport systems inner membrane component  57.91 
 
 
422 aa  453  1.0000000000000001e-126  Ralstonia pickettii 12J  Bacteria  normal  0.633443  hitchhiker  0.0000000331128 
 
 
-
 
NC_012856  Rpic12D_1520  binding-protein-dependent transport systems inner membrane component  57.4 
 
 
422 aa  447  1.0000000000000001e-124  Ralstonia pickettii 12D  Bacteria  normal  0.030853  normal  0.984041 
 
 
-
 
NC_011662  Tmz1t_0426  binding-protein-dependent transport systems inner membrane component  57.52 
 
 
424 aa  447  1.0000000000000001e-124  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1870  binding-protein-dependent transport systems inner membrane component  57.29 
 
 
423 aa  438  1e-121  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1787  binding-protein-dependent transport systems inner membrane component  56.01 
 
 
423 aa  437  1e-121  Dickeya dadantii Ech703  Bacteria  normal  0.229456  n/a   
 
 
-
 
NC_012917  PC1_2229  binding-protein-dependent transport systems inner membrane component  56.27 
 
 
422 aa  429  1e-119  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.838973  n/a   
 
 
-
 
NC_013421  Pecwa_2542  binding-protein-dependent transport systems inner membrane component  55.75 
 
 
422 aa  426  1e-118  Pectobacterium wasabiae WPP163  Bacteria  normal  0.275923  n/a   
 
 
-
 
NC_007948  Bpro_2915  binding-protein-dependent transport systems inner membrane component  54.9 
 
 
416 aa  423  1e-117  Polaromonas sp. JS666  Bacteria  normal  0.187641  normal 
 
 
-
 
NC_003295  RSc1732  transport system permease transmembrane protein  57.95 
 
 
420 aa  419  1e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0286401  normal 
 
 
-
 
NC_012791  Vapar_4698  binding-protein-dependent transport systems inner membrane component  55.9 
 
 
418 aa  414  1e-114  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1337  binding-protein-dependent transport systems inner membrane component  53.79 
 
 
421 aa  405  1.0000000000000001e-112  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1220  spermidine/putrescine ABC transporter, permease protein  53.79 
 
 
421 aa  405  1.0000000000000001e-112  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3108  spermidine/putrescine ABC transporter permease  53.12 
 
 
421 aa  401  9.999999999999999e-111  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3471  ABC spermidine/putrescine transporter, innermembrane subunit  48.67 
 
 
417 aa  398  1e-109  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.60984 
 
 
-
 
NC_010681  Bphyt_2373  binding-protein-dependent transport systems inner membrane component  49.62 
 
 
417 aa  393  1e-108  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0595  binding-protein-dependent transport systems inner membrane component  53.55 
 
 
413 aa  392  1e-108  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2381  binding-protein-dependent transport systems inner membrane component  51.88 
 
 
420 aa  388  1e-107  Burkholderia phymatum STM815  Bacteria  normal  0.916996  normal 
 
 
-
 
NC_007643  Rru_A2046  binding-protein dependent transport system inner membrane protein  53.81 
 
 
406 aa  389  1e-107  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.480866  n/a   
 
 
-
 
NC_008391  Bamb_4295  binding-protein-dependent transport systems inner membrane component  51.59 
 
 
420 aa  383  1e-105  Burkholderia ambifaria AMMD  Bacteria  normal  0.193876  normal 
 
 
-
 
NC_008781  Pnap_2633  binding-protein-dependent transport systems inner membrane component  53.05 
 
 
423 aa  375  1e-103  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.252621  normal 
 
 
-
 
NC_010625  Bphy_6037  binding-protein-dependent transport systems inner membrane component  48.52 
 
 
421 aa  371  1e-101  Burkholderia phymatum STM815  Bacteria  normal  0.356927  normal  0.017991 
 
 
-
 
NC_013456  VEA_003667  putative permease of ABC transporter  46.38 
 
 
426 aa  365  1e-100  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4043  binding-protein-dependent transport systems inner membrane component  54.44 
 
 
527 aa  336  5e-91  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7800  binding-protein-dependent transport systems inner membrane component  44.34 
 
 
424 aa  330  2e-89  Burkholderia phymatum STM815  Bacteria  normal  0.370122  normal 
 
 
-
 
NC_004311  BRA0328  spermidine/putrescine ABC transporter, permease protein, putative  43.66 
 
 
412 aa  329  4e-89  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0668  binding-protein-dependent transport systems inner membrane component  45.14 
 
 
424 aa  323  4e-87  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00457285 
 
 
-
 
NC_008686  Pden_0468  binding-protein-dependent transport systems inner membrane component  42.39 
 
 
416 aa  317  2e-85  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_2150  binding-protein-dependent transport systems inner membrane component  46.67 
 
 
433 aa  315  9.999999999999999e-85  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3461  binding-protein-dependent transport systems inner membrane component  46.67 
 
 
430 aa  315  9.999999999999999e-85  Paracoccus denitrificans PD1222  Bacteria  normal  0.881992  normal 
 
 
-
 
NC_009668  Oant_3715  binding-protein-dependent transport systems inner membrane component  43.9 
 
 
391 aa  307  3e-82  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4202  binding-protein-dependent transport systems inner membrane component  45.09 
 
 
411 aa  303  5.000000000000001e-81  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0532  binding-protein-dependent transport systems inner membrane component  45.62 
 
 
424 aa  301  1e-80  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.686624  normal 
 
 
-
 
NC_007493  RSP_1884  ABC polyamine/opine transporter, inner membrane subunit  45.36 
 
 
424 aa  299  5e-80  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.343799  n/a   
 
 
-
 
NC_009636  Smed_1717  binding-protein-dependent transport systems inner membrane component  43 
 
 
393 aa  286  5.999999999999999e-76  Sinorhizobium medicae WSM419  Bacteria  normal  0.25226  normal 
 
 
-
 
NC_011369  Rleg2_4106  binding-protein-dependent transport systems inner membrane component  45.12 
 
 
389 aa  286  5.999999999999999e-76  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011370  Rleg2_6320  binding-protein-dependent transport systems inner membrane component  42.07 
 
 
414 aa  281  1e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1612  spermidine/putrescine ABC transporter permease  40.76 
 
 
392 aa  273  3e-72  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2989  binding-protein-dependent transport systems inner membrane component  42.34 
 
 
541 aa  268  1e-70  Ruegeria sp. TM1040  Bacteria  normal  0.263811  normal  0.821949 
 
 
-
 
NC_007802  Jann_1269  binding-protein-dependent transport systems inner membrane component  50.7 
 
 
557 aa  244  1.9999999999999999e-63  Jannaschia sp. CCS1  Bacteria  normal  0.347255  normal  0.330105 
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  45.91 
 
 
302 aa  192  1e-47  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  45.91 
 
 
301 aa  191  2e-47  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  45.45 
 
 
301 aa  189  5.999999999999999e-47  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_010087  Bmul_6114  binding-protein-dependent transport systems inner membrane component  43.27 
 
 
294 aa  182  8.000000000000001e-45  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.132934  normal 
 
 
-
 
NC_011894  Mnod_3648  binding-protein-dependent transport systems inner membrane component  45.74 
 
 
288 aa  181  2e-44  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA1106  polyamine ABC transporter, permease protein, putative  43.22 
 
 
271 aa  180  4e-44  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3242  binding-protein dependent transport system inner membrane protein  39.6 
 
 
314 aa  180  4e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.549497  normal  0.829711 
 
 
-
 
NC_011368  Rleg2_4994  binding-protein-dependent transport systems inner membrane component  39.38 
 
 
290 aa  179  5.999999999999999e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5590  binding-protein-dependent transport systems inner membrane component  43.78 
 
 
290 aa  179  1e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2485  binding-protein-dependent transport systems inner membrane component  41.71 
 
 
283 aa  177  2e-43  Marinomonas sp. MWYL1  Bacteria  normal  0.0734345  normal 
 
 
-
 
NC_011894  Mnod_4262  binding-protein-dependent transport systems inner membrane component  42.99 
 
 
593 aa  177  4e-43  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  39.91 
 
 
597 aa  175  9.999999999999999e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6248  binding-protein-dependent transport systems inner membrane component  41.12 
 
 
291 aa  173  3.9999999999999995e-42  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.358621 
 
 
-
 
NC_012854  Rleg_6543  binding-protein-dependent transport systems inner membrane component  41.47 
 
 
290 aa  172  6.999999999999999e-42  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.548122  normal  0.277874 
 
 
-
 
NC_008254  Meso_1937  binding-protein-dependent transport systems inner membrane component  41.07 
 
 
606 aa  171  2e-41  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1954  binding-protein-dependent transport systems inner membrane component  40.79 
 
 
305 aa  169  6e-41  Pseudomonas putida F1  Bacteria  normal  0.336194  normal  0.870065 
 
 
-
 
NC_010501  PputW619_1934  binding-protein-dependent transport systems inner membrane component  39.57 
 
 
305 aa  169  7e-41  Pseudomonas putida W619  Bacteria  normal  normal  0.0157506 
 
 
-
 
NC_002947  PP_3815  binding-protein-dependent transport systems inner membrane component  40.79 
 
 
305 aa  169  9e-41  Pseudomonas putida KT2440  Bacteria  normal  0.972091  normal  0.192229 
 
 
-
 
NC_014165  Tbis_1589  binding-protein-dependent transporter inner membrane component  44.81 
 
 
303 aa  169  9e-41  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0639141 
 
 
-
 
NC_010322  PputGB1_2090  binding-protein-dependent transport systems inner membrane component  40.79 
 
 
305 aa  169  1e-40  Pseudomonas putida GB-1  Bacteria  normal  0.394579  normal 
 
 
-
 
NC_011988  Avi_6090  ABC transporter membrane spanning protein (polyamine)  39.33 
 
 
300 aa  165  1.0000000000000001e-39  Agrobacterium vitis S4  Bacteria  normal  0.467049  n/a   
 
 
-
 
NC_010676  Bphyt_4662  binding-protein-dependent transport systems inner membrane component  35.87 
 
 
324 aa  164  2.0000000000000002e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  0.93633  normal 
 
 
-
 
NC_009656  PSPA7_0394  polyamine transport protein PotH  41.58 
 
 
303 aa  164  2.0000000000000002e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.72562  n/a   
 
 
-
 
NC_007005  Psyr_2400  binding-protein dependent transport system inner membrane protein  39.2 
 
 
318 aa  164  3e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0272456  normal  0.898727 
 
 
-
 
NC_008688  Pden_4875  binding-protein-dependent transport systems inner membrane component  40.72 
 
 
587 aa  164  4.0000000000000004e-39  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.432532 
 
 
-
 
NC_010622  Bphy_1277  binding-protein-dependent transport systems inner membrane component  37.7 
 
 
309 aa  164  4.0000000000000004e-39  Burkholderia phymatum STM815  Bacteria  normal  0.197627  normal  0.200022 
 
 
-
 
NC_004578  PSPTO_2666  spermidine/putrescine ABC transporter, permease protein, putative  39.6 
 
 
284 aa  163  6e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0393724  n/a   
 
 
-
 
NC_010511  M446_3865  binding-protein-dependent transport systems inner membrane component  38.64 
 
 
283 aa  163  7e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.783769  normal 
 
 
-
 
NC_009439  Pmen_3448  binding-protein-dependent transport systems inner membrane component  42.41 
 
 
298 aa  162  1e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.420206 
 
 
-
 
NC_008463  PA14_03950  polyamine transport protein PotH  40.39 
 
 
293 aa  162  1e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2307  binding-protein-dependent transport systems inner membrane component  39.19 
 
 
309 aa  161  2e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  0.622  normal  0.150857 
 
 
-
 
NC_009636  Smed_0312  binding-protein-dependent transport systems inner membrane component  39.52 
 
 
303 aa  161  2e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.696873  normal 
 
 
-
 
NC_007951  Bxe_A1952  ABC polyamine transporter, inner membrane subunit  39.19 
 
 
309 aa  161  2e-38  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00258406  normal  0.610972 
 
 
-
 
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