More than 300 homologs were found in PanDaTox collection
for query gene Psyr_2400 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_2400  binding-protein dependent transport system inner membrane protein  100 
 
 
318 aa  621  1e-177  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0272456  normal  0.898727 
 
 
-
 
NC_004578  PSPTO_2666  spermidine/putrescine ABC transporter, permease protein, putative  97.89 
 
 
284 aa  519  1e-146  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0393724  n/a   
 
 
-
 
NC_007492  Pfl01_3242  binding-protein dependent transport system inner membrane protein  87.26 
 
 
314 aa  513  1e-144  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.549497  normal  0.829711 
 
 
-
 
NC_002947  PP_3815  binding-protein-dependent transport systems inner membrane component  81.65 
 
 
305 aa  466  9.999999999999999e-131  Pseudomonas putida KT2440  Bacteria  normal  0.972091  normal  0.192229 
 
 
-
 
NC_010322  PputGB1_2090  binding-protein-dependent transport systems inner membrane component  85.1 
 
 
305 aa  465  9.999999999999999e-131  Pseudomonas putida GB-1  Bacteria  normal  0.394579  normal 
 
 
-
 
NC_010501  PputW619_1934  binding-protein-dependent transport systems inner membrane component  86.09 
 
 
305 aa  450  1e-125  Pseudomonas putida W619  Bacteria  normal  normal  0.0157506 
 
 
-
 
NC_009439  Pmen_3448  binding-protein-dependent transport systems inner membrane component  87.8 
 
 
298 aa  434  1e-121  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.420206 
 
 
-
 
NC_009512  Pput_1954  binding-protein-dependent transport systems inner membrane component  85.76 
 
 
305 aa  435  1e-121  Pseudomonas putida F1  Bacteria  normal  0.336194  normal  0.870065 
 
 
-
 
NC_009654  Mmwyl1_2485  binding-protein-dependent transport systems inner membrane component  74.7 
 
 
283 aa  385  1e-106  Marinomonas sp. MWYL1  Bacteria  normal  0.0734345  normal 
 
 
-
 
NC_011368  Rleg2_5590  binding-protein-dependent transport systems inner membrane component  55.76 
 
 
290 aa  287  2e-76  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6248  binding-protein-dependent transport systems inner membrane component  55.43 
 
 
291 aa  285  8e-76  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.358621 
 
 
-
 
NC_012854  Rleg_6543  binding-protein-dependent transport systems inner membrane component  55.08 
 
 
290 aa  283  4.0000000000000003e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.548122  normal  0.277874 
 
 
-
 
NC_011988  Avi_6090  ABC transporter membrane spanning protein (polyamine)  53.12 
 
 
300 aa  282  6.000000000000001e-75  Agrobacterium vitis S4  Bacteria  normal  0.467049  n/a   
 
 
-
 
NC_010087  Bmul_6114  binding-protein-dependent transport systems inner membrane component  53.26 
 
 
294 aa  280  2e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.132934  normal 
 
 
-
 
NC_007434  BURPS1710b_2210  ABC transporter, membrane spanning protein (polyamine)  54.7 
 
 
294 aa  237  2e-61  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0568314  n/a   
 
 
-
 
NC_014165  Tbis_1589  binding-protein-dependent transporter inner membrane component  48.71 
 
 
303 aa  214  9.999999999999999e-55  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0639141 
 
 
-
 
NC_012791  Vapar_4698  binding-protein-dependent transport systems inner membrane component  42.92 
 
 
418 aa  200  3e-50  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0595  binding-protein-dependent transport systems inner membrane component  43.81 
 
 
413 aa  200  3e-50  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0447  binding-protein-dependent transport systems inner membrane component  46.82 
 
 
301 aa  198  7.999999999999999e-50  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2381  binding-protein-dependent transport systems inner membrane component  44.91 
 
 
420 aa  190  2e-47  Burkholderia phymatum STM815  Bacteria  normal  0.916996  normal 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  42.37 
 
 
301 aa  189  5e-47  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  42.37 
 
 
302 aa  189  7e-47  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_007948  Bpro_2915  binding-protein-dependent transport systems inner membrane component  42.4 
 
 
416 aa  187  2e-46  Polaromonas sp. JS666  Bacteria  normal  0.187641  normal 
 
 
-
 
NC_011894  Mnod_3648  binding-protein-dependent transport systems inner membrane component  44.93 
 
 
288 aa  186  3e-46  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  41.45 
 
 
301 aa  184  1.0000000000000001e-45  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_010625  Bphy_6037  binding-protein-dependent transport systems inner membrane component  39.35 
 
 
421 aa  183  3e-45  Burkholderia phymatum STM815  Bacteria  normal  0.356927  normal  0.017991 
 
 
-
 
NC_008781  Pnap_2633  binding-protein-dependent transport systems inner membrane component  43.32 
 
 
423 aa  183  3e-45  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.252621  normal 
 
 
-
 
NC_010681  Bphyt_2373  binding-protein-dependent transport systems inner membrane component  39.81 
 
 
417 aa  183  4.0000000000000006e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3471  ABC spermidine/putrescine transporter, innermembrane subunit  39.35 
 
 
417 aa  181  2e-44  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.60984 
 
 
-
 
NC_011368  Rleg2_4994  binding-protein-dependent transport systems inner membrane component  40 
 
 
290 aa  180  2e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2046  binding-protein dependent transport system inner membrane protein  43.32 
 
 
406 aa  179  7e-44  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.480866  n/a   
 
 
-
 
NC_008391  Bamb_4295  binding-protein-dependent transport systems inner membrane component  45.18 
 
 
420 aa  178  9e-44  Burkholderia ambifaria AMMD  Bacteria  normal  0.193876  normal 
 
 
-
 
NC_012880  Dd703_1787  binding-protein-dependent transport systems inner membrane component  45.13 
 
 
423 aa  175  7e-43  Dickeya dadantii Ech703  Bacteria  normal  0.229456  n/a   
 
 
-
 
NC_012917  PC1_2229  binding-protein-dependent transport systems inner membrane component  41.96 
 
 
422 aa  174  9.999999999999999e-43  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.838973  n/a   
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  38.94 
 
 
597 aa  175  9.999999999999999e-43  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2542  binding-protein-dependent transport systems inner membrane component  41.41 
 
 
422 aa  174  9.999999999999999e-43  Pectobacterium wasabiae WPP163  Bacteria  normal  0.275923  n/a   
 
 
-
 
NC_011894  Mnod_4262  binding-protein-dependent transport systems inner membrane component  38.04 
 
 
593 aa  174  1.9999999999999998e-42  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2931  spermidine/putrescine ABC transporter inner membrane protein  40.37 
 
 
422 aa  173  2.9999999999999996e-42  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4043  binding-protein-dependent transport systems inner membrane component  43.1 
 
 
527 aa  173  3.9999999999999995e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1870  binding-protein-dependent transport systems inner membrane component  45.13 
 
 
423 aa  172  6.999999999999999e-42  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0668  binding-protein-dependent transport systems inner membrane component  42.98 
 
 
424 aa  171  2e-41  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00457285 
 
 
-
 
NC_009708  YpsIP31758_1220  spermidine/putrescine ABC transporter, permease protein  45.41 
 
 
421 aa  170  4e-41  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0328  spermidine/putrescine ABC transporter, permease protein, putative  40.54 
 
 
412 aa  169  6e-41  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4613  binding-protein dependent transport system inner membrane protein  40 
 
 
415 aa  169  6e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.993847 
 
 
-
 
NC_010682  Rpic_1469  binding-protein-dependent transport systems inner membrane component  40.62 
 
 
422 aa  169  6e-41  Ralstonia pickettii 12J  Bacteria  normal  0.633443  hitchhiker  0.0000000331128 
 
 
-
 
NC_012856  Rpic12D_1520  binding-protein-dependent transport systems inner membrane component  38.83 
 
 
422 aa  169  7e-41  Ralstonia pickettii 12D  Bacteria  normal  0.030853  normal  0.984041 
 
 
-
 
NC_010676  Bphyt_6886  binding-protein-dependent transport systems inner membrane component  39.91 
 
 
425 aa  169  8e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  0.653272  normal  0.230244 
 
 
-
 
NC_007511  Bcep18194_B2168  ABC spermidine/putrescine transporter, inner membrane subunit  39.57 
 
 
418 aa  169  8e-41  Burkholderia sp. 383  Bacteria  normal  0.0193763  normal 
 
 
-
 
NC_010465  YPK_1337  binding-protein-dependent transport systems inner membrane component  44.93 
 
 
421 aa  168  9e-41  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5123  binding-protein dependent transport system inner membrane protein  39.2 
 
 
415 aa  168  1e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0230497  normal  0.706395 
 
 
-
 
NC_013456  VEA_003667  putative permease of ABC transporter  33.56 
 
 
426 aa  168  1e-40  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0564  polyamine ABC transporter, permease protein  39.6 
 
 
415 aa  167  2e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4875  binding-protein-dependent transport systems inner membrane component  37.45 
 
 
587 aa  166  2.9999999999999998e-40  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.432532 
 
 
-
 
NC_007650  BTH_II0644  spermidine/putrescine ABC transporter, permease protein  41.12 
 
 
419 aa  167  2.9999999999999998e-40  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_4323  binding-protein-dependent transport systems inner membrane component  40.28 
 
 
423 aa  166  4e-40  Burkholderia phymatum STM815  Bacteria  normal  normal  0.554758 
 
 
-
 
NC_010159  YpAngola_A3108  spermidine/putrescine ABC transporter permease  44.44 
 
 
421 aa  165  9e-40  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0413  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
415 aa  165  1.0000000000000001e-39  Pseudomonas putida KT2440  Bacteria  normal  0.155483  normal 
 
 
-
 
NC_009439  Pmen_4001  binding-protein-dependent transport systems inner membrane component  38 
 
 
415 aa  164  1.0000000000000001e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0447  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
415 aa  165  1.0000000000000001e-39  Pseudomonas putida F1  Bacteria  normal  normal  0.328312 
 
 
-
 
NC_009485  BBta_1612  spermidine/putrescine ABC transporter permease  41.47 
 
 
392 aa  164  1.0000000000000001e-39  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0433  spermidine/putrescine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0484  spermidine/putrescine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0813  spermidine/putrescine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia pseudomallei 1710b  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2360  putative polyamine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1813  spermidine/putrescine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia mallei NCTC 10229  Bacteria  normal  0.574113  n/a   
 
 
-
 
NC_009075  BURPS668_A2499  putative polyamine ABC transporter, permease protein  40.65 
 
 
419 aa  164  2.0000000000000002e-39  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4446  binding-protein-dependent transport systems inner membrane component  38.3 
 
 
418 aa  164  2.0000000000000002e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.126385  n/a   
 
 
-
 
NC_008254  Meso_1863  binding-protein-dependent transport systems inner membrane component  37.4 
 
 
285 aa  164  2.0000000000000002e-39  Chelativorans sp. BNC1  Bacteria  normal  0.844332  n/a   
 
 
-
 
NC_009049  Rsph17029_0532  binding-protein-dependent transport systems inner membrane component  42.98 
 
 
424 aa  164  2.0000000000000002e-39  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.686624  normal 
 
 
-
 
NC_010322  PputGB1_0444  binding-protein-dependent transport systems inner membrane component  38.89 
 
 
415 aa  164  2.0000000000000002e-39  Pseudomonas putida GB-1  Bacteria  normal  normal  0.382081 
 
 
-
 
NC_008543  Bcen2424_3920  binding-protein-dependent transport systems inner membrane component  38.3 
 
 
418 aa  164  2.0000000000000002e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_3607  binding-protein-dependent transport systems inner membrane component  38.3 
 
 
418 aa  164  2.0000000000000002e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3814  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
420 aa  163  3e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  0.156739  normal 
 
 
-
 
NC_011662  Tmz1t_0426  binding-protein-dependent transport systems inner membrane component  42.19 
 
 
424 aa  163  3e-39  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3298  binding-protein-dependent transport systems inner membrane component  39.72 
 
 
420 aa  164  3e-39  Burkholderia ambifaria AMMD  Bacteria  normal  0.753859  normal 
 
 
-
 
NC_004311  BRA1106  polyamine ABC transporter, permease protein, putative  38.46 
 
 
271 aa  163  4.0000000000000004e-39  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4663  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
446 aa  163  4.0000000000000004e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0108621  normal 
 
 
-
 
NC_010501  PputW619_4789  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
415 aa  162  5.0000000000000005e-39  Pseudomonas putida W619  Bacteria  normal  normal  0.966966 
 
 
-
 
NC_010087  Bmul_5430  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
462 aa  162  5.0000000000000005e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.105452 
 
 
-
 
NC_007493  RSP_1884  ABC polyamine/opine transporter, inner membrane subunit  42.54 
 
 
424 aa  162  7e-39  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.343799  n/a   
 
 
-
 
NC_010511  M446_3865  binding-protein-dependent transport systems inner membrane component  37.16 
 
 
283 aa  162  8.000000000000001e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.783769  normal 
 
 
-
 
NC_009654  Mmwyl1_3521  binding-protein-dependent transport systems inner membrane component  38.32 
 
 
296 aa  161  1e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.248217 
 
 
-
 
NC_008686  Pden_2150  binding-protein-dependent transport systems inner membrane component  39.47 
 
 
433 aa  161  1e-38  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008687  Pden_3461  binding-protein-dependent transport systems inner membrane component  39.47 
 
 
430 aa  161  1e-38  Paracoccus denitrificans PD1222  Bacteria  normal  0.881992  normal 
 
 
-
 
NC_009636  Smed_1717  binding-protein-dependent transport systems inner membrane component  39.64 
 
 
393 aa  159  4e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.25226  normal 
 
 
-
 
NC_009668  Oant_3715  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
391 aa  160  4e-38  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2989  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
541 aa  159  4e-38  Ruegeria sp. TM1040  Bacteria  normal  0.263811  normal  0.821949 
 
 
-
 
NC_011369  Rleg2_4106  binding-protein-dependent transport systems inner membrane component  40.99 
 
 
389 aa  159  4e-38  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3605  binding-protein-dependent transport systems inner membrane component  36.4 
 
 
295 aa  159  5e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0391464 
 
 
-
 
NC_011769  DvMF_2970  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
301 aa  159  6e-38  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.994225 
 
 
-
 
NC_007643  Rru_A1016  binding-protein dependent transport system inner membrane protein  35.02 
 
 
330 aa  159  6e-38  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.725697  n/a   
 
 
-
 
NC_010084  Bmul_2992  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
328 aa  159  6e-38  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1365  putative putrescine transport system permease protein  38.91 
 
 
302 aa  159  7e-38  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7800  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
424 aa  158  1e-37  Burkholderia phymatum STM815  Bacteria  normal  0.370122  normal 
 
 
-
 
NC_013739  Cwoe_4944  binding-protein-dependent transport systems inner membrane component  36.69 
 
 
588 aa  158  1e-37  Conexibacter woesei DSM 14684  Bacteria  normal  0.0237049  normal  0.467133 
 
 
-
 
NC_013422  Hneap_2375  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
304 aa  158  1e-37  Halothiobacillus neapolitanus c2  Bacteria  normal  0.113051  n/a   
 
 
-
 
NC_003910  CPS_4673  putrescine ABC transporter, permease protein  34.17 
 
 
317 aa  157  2e-37  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6067  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
323 aa  156  5.0000000000000005e-37  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2421  putative ABC spermidine/putrescine transporter permease protein  38.29 
 
 
291 aa  155  8e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_2818  binding-protein-dependent transport systems inner membrane component  34.7 
 
 
293 aa  155  9e-37  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.913053 
 
 
-
 
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