More than 300 homologs were found in PanDaTox collection
for query gene Psyr_4613 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0413  binding-protein-dependent transport systems inner membrane component  86.99 
 
 
415 aa  684    Pseudomonas putida KT2440  Bacteria  normal  0.155483  normal 
 
 
-
 
NC_010322  PputGB1_0444  binding-protein-dependent transport systems inner membrane component  87.23 
 
 
415 aa  685    Pseudomonas putida GB-1  Bacteria  normal  normal  0.382081 
 
 
-
 
NC_004578  PSPTO_0564  polyamine ABC transporter, permease protein  98.07 
 
 
415 aa  819    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_0447  binding-protein-dependent transport systems inner membrane component  86.51 
 
 
415 aa  681    Pseudomonas putida F1  Bacteria  normal  normal  0.328312 
 
 
-
 
NC_007005  Psyr_4613  binding-protein dependent transport system inner membrane protein  100 
 
 
415 aa  830    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.993847 
 
 
-
 
NC_010501  PputW619_4789  binding-protein-dependent transport systems inner membrane component  87.95 
 
 
415 aa  690    Pseudomonas putida W619  Bacteria  normal  normal  0.966966 
 
 
-
 
NC_007492  Pfl01_5123  binding-protein dependent transport system inner membrane protein  89.16 
 
 
415 aa  713    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0230497  normal  0.706395 
 
 
-
 
NC_008463  PA14_07890  putative permease of ABC transporter  81.16 
 
 
415 aa  644    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00567527 
 
 
-
 
NC_009656  PSPA7_0749  polyamine ABC transporter permease  81.69 
 
 
415 aa  657    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4001  binding-protein-dependent transport systems inner membrane component  78.07 
 
 
415 aa  625  1e-178  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6886  binding-protein-dependent transport systems inner membrane component  58.85 
 
 
425 aa  482  1e-135  Burkholderia phytofirmans PsJN  Bacteria  normal  0.653272  normal  0.230244 
 
 
-
 
NC_007952  Bxe_B2931  spermidine/putrescine ABC transporter inner membrane protein  58.61 
 
 
422 aa  482  1e-135  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4663  binding-protein-dependent transport systems inner membrane component  59.27 
 
 
446 aa  472  1e-132  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0108621  normal 
 
 
-
 
NC_010552  BamMC406_3814  binding-protein-dependent transport systems inner membrane component  60.55 
 
 
420 aa  474  1e-132  Burkholderia ambifaria MC40-6  Bacteria  normal  0.156739  normal 
 
 
-
 
NC_007511  Bcep18194_B2168  ABC spermidine/putrescine transporter, inner membrane subunit  60.61 
 
 
418 aa  473  1e-132  Burkholderia sp. 383  Bacteria  normal  0.0193763  normal 
 
 
-
 
NC_008391  Bamb_3298  binding-protein-dependent transport systems inner membrane component  60.55 
 
 
420 aa  473  1e-132  Burkholderia ambifaria AMMD  Bacteria  normal  0.753859  normal 
 
 
-
 
NC_010623  Bphy_4323  binding-protein-dependent transport systems inner membrane component  58.54 
 
 
423 aa  468  1.0000000000000001e-131  Burkholderia phymatum STM815  Bacteria  normal  normal  0.554758 
 
 
-
 
NC_007650  BTH_II0644  spermidine/putrescine ABC transporter, permease protein  60.74 
 
 
419 aa  470  1.0000000000000001e-131  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3607  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  470  1.0000000000000001e-131  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4446  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  470  1.0000000000000001e-131  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.126385  n/a   
 
 
-
 
NC_008543  Bcen2424_3920  binding-protein-dependent transport systems inner membrane component  60.35 
 
 
418 aa  470  1.0000000000000001e-131  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A0484  spermidine/putrescine ABC transporter, permease protein  60.25 
 
 
419 aa  465  9.999999999999999e-131  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5430  binding-protein-dependent transport systems inner membrane component  59.51 
 
 
462 aa  464  9.999999999999999e-131  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.105452 
 
 
-
 
NC_006349  BMAA0433  spermidine/putrescine ABC transporter, permease protein  60.25 
 
 
419 aa  465  9.999999999999999e-131  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0813  spermidine/putrescine ABC transporter, permease protein  60.25 
 
 
419 aa  465  9.999999999999999e-131  Burkholderia pseudomallei 1710b  Bacteria  normal  0.780468  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2360  putative polyamine ABC transporter, permease protein  60.25 
 
 
419 aa  465  9.999999999999999e-131  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2499  putative polyamine ABC transporter, permease protein  60.25 
 
 
419 aa  466  9.999999999999999e-131  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1813  spermidine/putrescine ABC transporter, permease protein  60.25 
 
 
419 aa  465  9.999999999999999e-131  Burkholderia mallei NCTC 10229  Bacteria  normal  0.574113  n/a   
 
 
-
 
NC_010682  Rpic_1469  binding-protein-dependent transport systems inner membrane component  57.4 
 
 
422 aa  457  1e-127  Ralstonia pickettii 12J  Bacteria  normal  0.633443  hitchhiker  0.0000000331128 
 
 
-
 
NC_012856  Rpic12D_1520  binding-protein-dependent transport systems inner membrane component  57.4 
 
 
422 aa  454  1.0000000000000001e-126  Ralstonia pickettii 12D  Bacteria  normal  0.030853  normal  0.984041 
 
 
-
 
NC_007948  Bpro_2915  binding-protein-dependent transport systems inner membrane component  55.75 
 
 
416 aa  432  1e-120  Polaromonas sp. JS666  Bacteria  normal  0.187641  normal 
 
 
-
 
NC_011662  Tmz1t_0426  binding-protein-dependent transport systems inner membrane component  55.34 
 
 
424 aa  434  1e-120  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1732  transport system permease transmembrane protein  57.18 
 
 
420 aa  425  1e-118  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0286401  normal 
 
 
-
 
NC_012912  Dd1591_1870  binding-protein-dependent transport systems inner membrane component  54.45 
 
 
423 aa  427  1e-118  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1787  binding-protein-dependent transport systems inner membrane component  53.45 
 
 
423 aa  424  1e-117  Dickeya dadantii Ech703  Bacteria  normal  0.229456  n/a   
 
 
-
 
NC_012791  Vapar_4698  binding-protein-dependent transport systems inner membrane component  56.25 
 
 
418 aa  421  1e-116  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2229  binding-protein-dependent transport systems inner membrane component  52.71 
 
 
422 aa  418  9.999999999999999e-116  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.838973  n/a   
 
 
-
 
NC_013421  Pecwa_2542  binding-protein-dependent transport systems inner membrane component  52.9 
 
 
422 aa  415  1e-114  Pectobacterium wasabiae WPP163  Bacteria  normal  0.275923  n/a   
 
 
-
 
NC_010465  YPK_1337  binding-protein-dependent transport systems inner membrane component  53.14 
 
 
421 aa  397  1e-109  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0595  binding-protein-dependent transport systems inner membrane component  53.79 
 
 
413 aa  395  1e-109  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1220  spermidine/putrescine ABC transporter, permease protein  53.14 
 
 
421 aa  398  1e-109  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2373  binding-protein-dependent transport systems inner membrane component  48.91 
 
 
417 aa  394  1e-108  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_2381  binding-protein-dependent transport systems inner membrane component  51.34 
 
 
420 aa  392  1e-108  Burkholderia phymatum STM815  Bacteria  normal  0.916996  normal 
 
 
-
 
NC_010159  YpAngola_A3108  spermidine/putrescine ABC transporter permease  52.62 
 
 
421 aa  393  1e-108  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3471  ABC spermidine/putrescine transporter, innermembrane subunit  48.86 
 
 
417 aa  391  1e-107  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.60984 
 
 
-
 
NC_007643  Rru_A2046  binding-protein dependent transport system inner membrane protein  52.09 
 
 
406 aa  385  1e-106  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.480866  n/a   
 
 
-
 
NC_008391  Bamb_4295  binding-protein-dependent transport systems inner membrane component  50 
 
 
420 aa  384  1e-105  Burkholderia ambifaria AMMD  Bacteria  normal  0.193876  normal 
 
 
-
 
NC_013456  VEA_003667  putative permease of ABC transporter  49.13 
 
 
426 aa  380  1e-104  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2633  binding-protein-dependent transport systems inner membrane component  52.54 
 
 
423 aa  375  1e-102  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.252621  normal 
 
 
-
 
NC_010625  Bphy_6037  binding-protein-dependent transport systems inner membrane component  47.85 
 
 
421 aa  371  1e-101  Burkholderia phymatum STM815  Bacteria  normal  0.356927  normal  0.017991 
 
 
-
 
NC_008786  Veis_4043  binding-protein-dependent transport systems inner membrane component  54.55 
 
 
527 aa  343  2.9999999999999997e-93  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0328  spermidine/putrescine ABC transporter, permease protein, putative  44.16 
 
 
412 aa  330  4e-89  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7800  binding-protein-dependent transport systems inner membrane component  42.72 
 
 
424 aa  318  7.999999999999999e-86  Burkholderia phymatum STM815  Bacteria  normal  0.370122  normal 
 
 
-
 
NC_008686  Pden_0468  binding-protein-dependent transport systems inner membrane component  42.64 
 
 
416 aa  317  2e-85  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0668  binding-protein-dependent transport systems inner membrane component  43.92 
 
 
424 aa  315  9.999999999999999e-85  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00457285 
 
 
-
 
NC_008687  Pden_3461  binding-protein-dependent transport systems inner membrane component  45.87 
 
 
430 aa  314  1.9999999999999998e-84  Paracoccus denitrificans PD1222  Bacteria  normal  0.881992  normal 
 
 
-
 
NC_008686  Pden_2150  binding-protein-dependent transport systems inner membrane component  45.87 
 
 
433 aa  314  1.9999999999999998e-84  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3715  binding-protein-dependent transport systems inner membrane component  44.42 
 
 
391 aa  306  3e-82  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4202  binding-protein-dependent transport systems inner membrane component  43.36 
 
 
411 aa  301  1e-80  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_0532  binding-protein-dependent transport systems inner membrane component  45.19 
 
 
424 aa  298  9e-80  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.686624  normal 
 
 
-
 
NC_007493  RSP_1884  ABC polyamine/opine transporter, inner membrane subunit  45.19 
 
 
424 aa  294  2e-78  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.343799  n/a   
 
 
-
 
NC_011369  Rleg2_4106  binding-protein-dependent transport systems inner membrane component  43.47 
 
 
389 aa  281  2e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1612  spermidine/putrescine ABC transporter permease  41.03 
 
 
392 aa  278  9e-74  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1717  binding-protein-dependent transport systems inner membrane component  42.02 
 
 
393 aa  277  3e-73  Sinorhizobium medicae WSM419  Bacteria  normal  0.25226  normal 
 
 
-
 
NC_011370  Rleg2_6320  binding-protein-dependent transport systems inner membrane component  40.77 
 
 
414 aa  275  1.0000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2989  binding-protein-dependent transport systems inner membrane component  47.9 
 
 
541 aa  264  2e-69  Ruegeria sp. TM1040  Bacteria  normal  0.263811  normal  0.821949 
 
 
-
 
NC_007802  Jann_1269  binding-protein-dependent transport systems inner membrane component  49.3 
 
 
557 aa  237  3e-61  Jannaschia sp. CCS1  Bacteria  normal  0.347255  normal  0.330105 
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  46.63 
 
 
302 aa  197  3e-49  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  46.63 
 
 
301 aa  195  1e-48  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  45.67 
 
 
301 aa  192  6e-48  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_007492  Pfl01_3242  binding-protein dependent transport system inner membrane protein  40.4 
 
 
314 aa  182  1e-44  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.549497  normal  0.829711 
 
 
-
 
NC_011368  Rleg2_4994  binding-protein-dependent transport systems inner membrane component  38.22 
 
 
290 aa  180  2.9999999999999997e-44  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3648  binding-protein-dependent transport systems inner membrane component  44.39 
 
 
288 aa  181  2.9999999999999997e-44  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2485  binding-protein-dependent transport systems inner membrane component  42.18 
 
 
283 aa  180  4e-44  Marinomonas sp. MWYL1  Bacteria  normal  0.0734345  normal 
 
 
-
 
NC_010087  Bmul_6114  binding-protein-dependent transport systems inner membrane component  39.27 
 
 
294 aa  179  9e-44  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.132934  normal 
 
 
-
 
NC_011368  Rleg2_5590  binding-protein-dependent transport systems inner membrane component  42.67 
 
 
290 aa  179  1e-43  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6248  binding-protein-dependent transport systems inner membrane component  42.06 
 
 
291 aa  177  4e-43  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.358621 
 
 
-
 
NC_012854  Rleg_6543  binding-protein-dependent transport systems inner membrane component  41.94 
 
 
290 aa  176  5e-43  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.548122  normal  0.277874 
 
 
-
 
NC_004311  BRA1106  polyamine ABC transporter, permease protein, putative  40.7 
 
 
271 aa  175  1.9999999999999998e-42  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_2367  binding-protein-dependent transport systems inner membrane component  38.57 
 
 
597 aa  174  2.9999999999999996e-42  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4262  binding-protein-dependent transport systems inner membrane component  40.72 
 
 
593 aa  173  3.9999999999999995e-42  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1954  binding-protein-dependent transport systems inner membrane component  43.13 
 
 
305 aa  174  3.9999999999999995e-42  Pseudomonas putida F1  Bacteria  normal  0.336194  normal  0.870065 
 
 
-
 
NC_008254  Meso_1937  binding-protein-dependent transport systems inner membrane component  41.07 
 
 
606 aa  173  5e-42  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_6090  ABC transporter membrane spanning protein (polyamine)  40.59 
 
 
300 aa  173  5.999999999999999e-42  Agrobacterium vitis S4  Bacteria  normal  0.467049  n/a   
 
 
-
 
NC_002947  PP_3815  binding-protein-dependent transport systems inner membrane component  43.13 
 
 
305 aa  172  6.999999999999999e-42  Pseudomonas putida KT2440  Bacteria  normal  0.972091  normal  0.192229 
 
 
-
 
NC_010322  PputGB1_2090  binding-protein-dependent transport systems inner membrane component  43.13 
 
 
305 aa  172  7.999999999999999e-42  Pseudomonas putida GB-1  Bacteria  normal  0.394579  normal 
 
 
-
 
NC_010501  PputW619_1934  binding-protein-dependent transport systems inner membrane component  40.85 
 
 
305 aa  172  7.999999999999999e-42  Pseudomonas putida W619  Bacteria  normal  normal  0.0157506 
 
 
-
 
NC_007005  Psyr_2400  binding-protein dependent transport system inner membrane protein  40 
 
 
318 aa  166  8e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0272456  normal  0.898727 
 
 
-
 
NC_004578  PSPTO_2666  spermidine/putrescine ABC transporter, permease protein, putative  40.4 
 
 
284 aa  165  1.0000000000000001e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0393724  n/a   
 
 
-
 
NC_007434  BURPS1710b_2210  ABC transporter, membrane spanning protein (polyamine)  41.26 
 
 
294 aa  165  2.0000000000000002e-39  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0568314  n/a   
 
 
-
 
NC_009439  Pmen_3448  binding-protein-dependent transport systems inner membrane component  42.41 
 
 
298 aa  164  3e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.420206 
 
 
-
 
NC_014165  Tbis_1589  binding-protein-dependent transporter inner membrane component  43.59 
 
 
303 aa  164  3e-39  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0639141 
 
 
-
 
NC_010511  M446_3865  binding-protein-dependent transport systems inner membrane component  38.18 
 
 
283 aa  164  4.0000000000000004e-39  Methylobacterium sp. 4-46  Bacteria  normal  0.783769  normal 
 
 
-
 
NC_013510  Tcur_0447  binding-protein-dependent transport systems inner membrane component  40.72 
 
 
301 aa  162  1e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0394  polyamine transport protein PotH  40.1 
 
 
303 aa  161  2e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  0.72562  n/a   
 
 
-
 
NC_011729  PCC7424_3605  binding-protein-dependent transport systems inner membrane component  39.25 
 
 
295 aa  161  2e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0391464 
 
 
-
 
NC_008312  Tery_2818  binding-protein-dependent transport systems inner membrane component  40.19 
 
 
293 aa  160  4e-38  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.913053 
 
 
-
 
NC_010676  Bphyt_4662  binding-protein-dependent transport systems inner membrane component  35.62 
 
 
324 aa  160  4e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  0.93633  normal 
 
 
-
 
NC_007509  Bcep18194_C7681  ABC spermidine/putrescine transporter, inner membrane subunit  43.5 
 
 
297 aa  160  5e-38  Burkholderia sp. 383  Bacteria  normal  0.962209  normal  0.12531 
 
 
-
 
NC_010622  Bphy_1277  binding-protein-dependent transport systems inner membrane component  38.43 
 
 
309 aa  160  5e-38  Burkholderia phymatum STM815  Bacteria  normal  0.197627  normal  0.200022 
 
 
-
 
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