Gene RSc1732 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1732 
Symbol 
ID1220570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp1852895 
End bp1854157 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content69% 
IMG OID637238124 
Producttransport system permease transmembrane protein 
Protein accessionNP_519853 
Protein GI17546451 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0286401 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGATCA CGGCTGACAC GACCCCCGAT TCGACAGCCA GACTCAAACG CGAGCTCAAG 
AGCGCGGAAG CGCGCCGGCG CGCCATGGCG CTGGCCCTGG TGGCGCCGCT CGCCCTCTTC
CTCTTGCTCA TCTTCGTGGT GCCGATCGGC GCGCTGCTGA CCCGCGCGGT GCAGAACCCC
GAGGTGGCGG ACGCCCTACC CAGGACGGTC GCCGCGCTCA AGAGCTGGGA CCGCAGGACC
CCGCCGGCCG ACGCCGCCTA CGCCGCCCTC GCCGACGACC TGACCGCCAC GCAGGCCGGC
GAGGCGATGG GCGCCCTGGC CCGCCGCCTG AACACCGAAA TCTCCGGCTT CCGCTCGCTG
GTCGCCAAGA CCGCGCGCGC CATGCCGCTC GCCGACGAAC AAGGCCATGC GCTGGCGCCG
GCCCAGACCC GCGCCCGGCT GGTCGAGCTC GACGAGCGCT GGGCCGACAC CGCCTACTGG
CAGGCCATCG CCAAGAACAG CAGCCGCACC TCGCCGTTCT ACCTGCTGGC CGCGCTCGAC
CACCGCCAGG ACGCCTTCGG CCATATCGAG GCGACCGACC CCGACGAGCA GATCTACGTC
ACCGTGTTCG GCCGCACCTT CGTCATCAGC GCCGTGGTCA CGCTGCTCAC GCTGCTGCTG
GGCTACCCGC TGGCGTACTG GATCTCGACG CTGTCGGAGC GCCGCGCCAA CCTGGTGATG
GTGCTGGTGC TGATTCCGTT CTGGACCTCG ATCCTGGTGC GCGTGGCCGC GTGGATCGTG
CTGCTGCAGA GCGAGGGCCT CGTCAACCAT GCGCTGACGG GCCTGGGGCT GATCCGCGAG
CCGCTGGCGC TGCTGTTCAA CCGCATCGGC GTCTATATCT CGATGACGCA CATCCTGCTG
CCGTTCATGA TCCTGCCCCT GTACAGCGTG ATGAAGTCGG TCCCGTCCAC CTACCAGCGT
GCGGCGGTGT CGCTGGGCAG CCATCCGTTC GCGGCGTTCT GGCGCGTGTA TGTGCCGCAG
ACCTACCCGG GCGTGGGTGC CGGCGCGCTG CTGGTGTTCA TCCTCGCGCT CGGCTACTAC
ATCACGCCCG CGCTGCTGGG CGGCCCGAAC GACCAGATGG TCAGCTACTA CGTGGCGTAC
TTCACCAACG TCACCATCAA CTGGGGCATG GCATGCGCGC TGGGCGCGCT GCTGCTGGCG
GCCACGCTGG TGCTGTACGG CGTCTACGGC CGCTTCACGC GCGCCAAGGC CAACGCGCGC
TGA
 
Protein sequence
MTITADTTPD STARLKRELK SAEARRRAMA LALVAPLALF LLLIFVVPIG ALLTRAVQNP 
EVADALPRTV AALKSWDRRT PPADAAYAAL ADDLTATQAG EAMGALARRL NTEISGFRSL
VAKTARAMPL ADEQGHALAP AQTRARLVEL DERWADTAYW QAIAKNSSRT SPFYLLAALD
HRQDAFGHIE ATDPDEQIYV TVFGRTFVIS AVVTLLTLLL GYPLAYWIST LSERRANLVM
VLVLIPFWTS ILVRVAAWIV LLQSEGLVNH ALTGLGLIRE PLALLFNRIG VYISMTHILL
PFMILPLYSV MKSVPSTYQR AAVSLGSHPF AAFWRVYVPQ TYPGVGAGAL LVFILALGYY
ITPALLGGPN DQMVSYYVAY FTNVTINWGM ACALGALLLA ATLVLYGVYG RFTRAKANAR