Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc1732 |
Symbol | |
ID | 1220570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 1852895 |
End bp | 1854157 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637238124 |
Product | transport system permease transmembrane protein |
Protein accession | NP_519853 |
Protein GI | 17546451 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0286401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGATCA CGGCTGACAC GACCCCCGAT TCGACAGCCA GACTCAAACG CGAGCTCAAG AGCGCGGAAG CGCGCCGGCG CGCCATGGCG CTGGCCCTGG TGGCGCCGCT CGCCCTCTTC CTCTTGCTCA TCTTCGTGGT GCCGATCGGC GCGCTGCTGA CCCGCGCGGT GCAGAACCCC GAGGTGGCGG ACGCCCTACC CAGGACGGTC GCCGCGCTCA AGAGCTGGGA CCGCAGGACC CCGCCGGCCG ACGCCGCCTA CGCCGCCCTC GCCGACGACC TGACCGCCAC GCAGGCCGGC GAGGCGATGG GCGCCCTGGC CCGCCGCCTG AACACCGAAA TCTCCGGCTT CCGCTCGCTG GTCGCCAAGA CCGCGCGCGC CATGCCGCTC GCCGACGAAC AAGGCCATGC GCTGGCGCCG GCCCAGACCC GCGCCCGGCT GGTCGAGCTC GACGAGCGCT GGGCCGACAC CGCCTACTGG CAGGCCATCG CCAAGAACAG CAGCCGCACC TCGCCGTTCT ACCTGCTGGC CGCGCTCGAC CACCGCCAGG ACGCCTTCGG CCATATCGAG GCGACCGACC CCGACGAGCA GATCTACGTC ACCGTGTTCG GCCGCACCTT CGTCATCAGC GCCGTGGTCA CGCTGCTCAC GCTGCTGCTG GGCTACCCGC TGGCGTACTG GATCTCGACG CTGTCGGAGC GCCGCGCCAA CCTGGTGATG GTGCTGGTGC TGATTCCGTT CTGGACCTCG ATCCTGGTGC GCGTGGCCGC GTGGATCGTG CTGCTGCAGA GCGAGGGCCT CGTCAACCAT GCGCTGACGG GCCTGGGGCT GATCCGCGAG CCGCTGGCGC TGCTGTTCAA CCGCATCGGC GTCTATATCT CGATGACGCA CATCCTGCTG CCGTTCATGA TCCTGCCCCT GTACAGCGTG ATGAAGTCGG TCCCGTCCAC CTACCAGCGT GCGGCGGTGT CGCTGGGCAG CCATCCGTTC GCGGCGTTCT GGCGCGTGTA TGTGCCGCAG ACCTACCCGG GCGTGGGTGC CGGCGCGCTG CTGGTGTTCA TCCTCGCGCT CGGCTACTAC ATCACGCCCG CGCTGCTGGG CGGCCCGAAC GACCAGATGG TCAGCTACTA CGTGGCGTAC TTCACCAACG TCACCATCAA CTGGGGCATG GCATGCGCGC TGGGCGCGCT GCTGCTGGCG GCCACGCTGG TGCTGTACGG CGTCTACGGC CGCTTCACGC GCGCCAAGGC CAACGCGCGC TGA
|
Protein sequence | MTITADTTPD STARLKRELK SAEARRRAMA LALVAPLALF LLLIFVVPIG ALLTRAVQNP EVADALPRTV AALKSWDRRT PPADAAYAAL ADDLTATQAG EAMGALARRL NTEISGFRSL VAKTARAMPL ADEQGHALAP AQTRARLVEL DERWADTAYW QAIAKNSSRT SPFYLLAALD HRQDAFGHIE ATDPDEQIYV TVFGRTFVIS AVVTLLTLLL GYPLAYWIST LSERRANLVM VLVLIPFWTS ILVRVAAWIV LLQSEGLVNH ALTGLGLIRE PLALLFNRIG VYISMTHILL PFMILPLYSV MKSVPSTYQR AAVSLGSHPF AAFWRVYVPQ TYPGVGAGAL LVFILALGYY ITPALLGGPN DQMVSYYVAY FTNVTINWGM ACALGALLLA ATLVLYGVYG RFTRAKANAR
|
| |