| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6090 |
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| Symbol | |
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| ID | 7380743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1112017 |
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| End bp | 1112919 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649586 |
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| Product | ABC transporter membrane spanning protein (polyamine) |
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| Protein accession | YP_002547811 |
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| Protein GI | 222107020 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.467049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAAGGTG CCGGACGGGT TTCGCAAGGA AGCGGCATGG CGTCCCCGAT CTCGACCATT
GAACAGCCCC ATAGAAGCCG GTGGGGTTTC GGCAATAAAG CCGCGACCCT GCCTGCGCTG
GTGTTGATCC TGATTTTCTT CGTTTTACCG GTGCTGGCTC TGCTGACGCG CTCGGTGACG
GAGCCGGTTC TCGGCCTTGG CAATTATGCC GCATTGCTGG GAAGCGCGAC CTATCTGAAA
ATCTTCTTCA ACACGTTTTT CGTCTCGGCC TTGGTCACGG CAATTTCGCT ATTGATCGGC
TTTCCCGTTG CCTGGGCGCT CGCGATCATG CCGCAACGAT TGGCCTCCGT GATTTTTGCC
ATCGTGTTGC TGTCGATGTG GACCAATCTT CTGGCCCGCA CCTATGCCTG GATGGTGCTG
TTACAGCGCA CCGGGGTCAT CAACAAAACG CTGATCAGTC TCGGTGTGAT CGATACGCCG
CTGGTGATGG TCAACAACCT CGTCGGTGTC ACCATCGGGA TGAGCTATAT CATGCTGCCC
TTCATCATTA TTCCGCTCTA TGGGGTGATC CGCAAGATCG ATCCGGCGCT GTTGCAGGCG
GCAGCACTGT GCGGCGCGAC GCGCTGGCAG TCGCTGGTGA CAGTGCTGCT GCCGCTCGCC
ATGCCGGGCA TGGTGTCGGG CGGGTTGATG GTGTTCGTCA TGTCGCTTGG CTATTTCGTC
ACACCGTCGC TGCTCGGCGG CACATCCAAT ATGATGCTGG CCGAACTGAT CGCCCAATTC
GTGCAATCGC TGGTCAATTG GGGCATGGGC GGTGCGGCGG CGCTGGTACT GCTGGTGGTG
ACGCTGAGCC TTTATGCCCT GCAACTGAAA CTGTTCGGTG CAGCCGGTGA GGGAGGGCGC
TGA
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| Protein sequence | MQGAGRVSQG SGMASPISTI EQPHRSRWGF GNKAATLPAL VLILIFFVLP VLALLTRSVT
EPVLGLGNYA ALLGSATYLK IFFNTFFVSA LVTAISLLIG FPVAWALAIM PQRLASVIFA
IVLLSMWTNL LARTYAWMVL LQRTGVINKT LISLGVIDTP LVMVNNLVGV TIGMSYIMLP
FIIIPLYGVI RKIDPALLQA AALCGATRWQ SLVTVLLPLA MPGMVSGGLM VFVMSLGYFV
TPSLLGGTSN MMLAELIAQF VQSLVNWGMG GAAALVLLVV TLSLYALQLK LFGAAGEGGR
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