| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3814 |
|---|
| Symbol | |
|---|
| ID | 6180399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 803746 |
|---|
| End bp | 805008 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641683585 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001810497 |
|---|
| Protein GI | 172062846 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.156739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCG CTCCTTCCTC GCCGTCGACA GCCGCGCTCA AGCGCGAACT GAAGGCCGCC
GAGGCCCGCA AGCGCACGAT GGCACTGCTG CTGGTCGCGC CGCTCGCGAT CTTCCTGCTG
CTCATCTTCG TCGTGCCGAT CGGCACGCTG CTCACGCGCG CGGTGCAGAA CCCCGAGATC
GCGACCGCGC TGCCAAGGAC GGTCGCCGCG CTGTCGGGCT GGGACCGCAA GGCGCCGCCG
GCCGACGCTG CGTACGTCGC GCTCGCGGCC GACATGACGA AGGTCGCCGA CAGCGAGGCG
ATGGGCGCGC TCGCGCGGCG CCTGAACACC GAGATTCCCG GCTATCGCTC GCTCGTCGCG
AAGACGGCGC GTGCGATGCC GCTGAAGGGC GACAACGATG CCGTCGCGGC GCTGACGCCC
GCGCAAACGC GCGCGAAACT GCTCGACCTC GATGCGCGCT GGGGCGATGC CGCGTACTGG
CAGGCGATCG CGAAGAACGG CAGCCAGGTG TCGCCGTTCT ACCTGCTCGC CGCGCTCGAC
CACAAGCAGG ACGGCTTCGG ACAGATCGTG CAGGCCGATC CCGACCAGTC GATCTATCTG
TCGATCTTCG GCCGCACGTT CGTGATCGGC GTCGCGGTCA CGCTGTTCGC GCTGCTGCTC
GGCTATCCGC TCGCATACTG GATCTCGACG CTGTCGGATC GGCGCGCGAA CCTCGTGATG
ATCCTGGTGC TGATTCCGTT CTGGACGTCG GTGCTGGTGC GCGTCGCTGC GTGGATCGTG
CTGCTGCAAA GCGAGGGGCT GATCAACACG GCGCTGATCG GCAGCGGGCT GATCTCGCAT
CCGCTGGCGC TGCTGTTCAA TCGCGTCGGC GTGTACATCT CGATGACGCA TATCCTGCTG
CCGTTCATGA TCCTGCCGCT CTACAGCGTG ATGAAGTCGA TCCCGCCGAC CTACCAGCGC
GCGGCCGTCT CGCTCGGCAG CCATCCGTTC GCGGCGTTCT GGCGCGTGTA CGTGCCGCAG
ACCTATCCGG GCGTCGGCGC GGGCGCGCTG CTCGTGTTTA TCCTCGCGAT CGGCTACTAC
ATCACGCCCG CGCTGCTCGG CGGGCCGAAC GACCAGATGG TCAGCTACTA CGTCGCGTAC
TTCACGAACG TGACGATCAA CTGGGGCATG GCGTGCGCGC TCGGCGGGCT GCTGCTCGCG
GCGACGCTGG TGCTGTATGC GGTGTACGGG CGCTTCACGC GCTCGAACGT GAGCCTCGGC
TGA
|
|---|
| Protein sequence | MTIAPSSPST AALKRELKAA EARKRTMALL LVAPLAIFLL LIFVVPIGTL LTRAVQNPEI
ATALPRTVAA LSGWDRKAPP ADAAYVALAA DMTKVADSEA MGALARRLNT EIPGYRSLVA
KTARAMPLKG DNDAVAALTP AQTRAKLLDL DARWGDAAYW QAIAKNGSQV SPFYLLAALD
HKQDGFGQIV QADPDQSIYL SIFGRTFVIG VAVTLFALLL GYPLAYWIST LSDRRANLVM
ILVLIPFWTS VLVRVAAWIV LLQSEGLINT ALIGSGLISH PLALLFNRVG VYISMTHILL
PFMILPLYSV MKSIPPTYQR AAVSLGSHPF AAFWRVYVPQ TYPGVGAGAL LVFILAIGYY
ITPALLGGPN DQMVSYYVAY FTNVTINWGM ACALGGLLLA ATLVLYAVYG RFTRSNVSLG
|
|---|
| |