183 homologs were found in PanDaTox collection
for query gene Dbac_0139 on replicon NC_013173
Organism: Desulfomicrobium baculatum DSM 4028



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013173  Dbac_0139  hydrogenase expression/formation protein HypD  100 
 
 
360 aa  739    Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0327705  n/a   
 
 
-
 
NC_008751  Dvul_2657  hydrogenase formation HypD protein  65.65 
 
 
365 aa  501  1e-141  Desulfovibrio vulgaris DP4  Bacteria  normal  0.554139  normal 
 
 
-
 
NC_007519  Dde_0364  hydrogenase expression/formation protein HypD  66.2 
 
 
363 aa  499  1e-140  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2276  hydrogenase formation HypD protein  64.27 
 
 
365 aa  479  1e-134  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013223  Dret_1076  hydrogenase expression/formation protein HypD  61.84 
 
 
362 aa  478  1e-133  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.490079  normal  0.158086 
 
 
-
 
NC_011883  Ddes_0801  hydrogenase formation HypD protein  62.78 
 
 
363 aa  476  1e-133  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.476229  n/a   
 
 
-
 
NC_013165  Shel_00520  hydrogenase expression/formation protein HypD  53.09 
 
 
359 aa  400  9.999999999999999e-111  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.768051  normal 
 
 
-
 
NC_013204  Elen_0142  hydrogenase expression/formation protein HypD  53.52 
 
 
393 aa  385  1e-106  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_2007  hydrogenase formation HypD protein  50.55 
 
 
368 aa  368  1e-101  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0308  hydrogenase expression/formation protein HypD  51.1 
 
 
363 aa  366  1e-100  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2778  hydrogenase expression/formation protein HypD  52.49 
 
 
363 aa  365  1e-100  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0464  hydrogenase expression/formation protein HypD  50.84 
 
 
361 aa  367  1e-100  Clostridium cellulolyticum H10  Bacteria  normal  0.0327148  n/a   
 
 
-
 
NC_010814  Glov_3063  hydrogenase expression/formation protein HypD  49.17 
 
 
365 aa  364  1e-99  Geobacter lovleyi SZ  Bacteria  normal  0.454763  n/a   
 
 
-
 
NC_013170  Ccur_01200  hydrogenase expression/formation protein HypD  48.36 
 
 
370 aa  363  3e-99  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_0117  hydrogenase formation HypD protein  49.45 
 
 
363 aa  362  7.0000000000000005e-99  Geobacter metallireducens GS-15  Bacteria  normal  0.0182713  normal 
 
 
-
 
NC_010424  Daud_1643  hydrogenase expression/formation protein HypD  49.73 
 
 
373 aa  360  2e-98  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3634  hydrogenase expression/formation protein HypD  51.06 
 
 
367 aa  358  9.999999999999999e-98  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1132  hydrogenase expression/formation protein HypD  48.9 
 
 
363 aa  356  2.9999999999999997e-97  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3130  hydrogenase expression/formation protein HypD  48.9 
 
 
363 aa  357  2.9999999999999997e-97  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3877  hydrogenase expression/formation protein HypD  44.75 
 
 
382 aa  352  5e-96  'Nostoc azollae' 0708  Bacteria  normal  0.848874  n/a   
 
 
-
 
NC_011899  Hore_03910  hydrogenase formation HypD protein  48.2 
 
 
365 aa  352  7e-96  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_3236  hydrogenase expression/formation protein HypD  49.72 
 
 
376 aa  351  8.999999999999999e-96  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_4014  hydrogenase expression/formation protein HypD  47.5 
 
 
360 aa  346  3e-94  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.372388  normal  0.161681 
 
 
-
 
NC_011884  Cyan7425_0472  hydrogenase expression/formation protein HypD  46.87 
 
 
384 aa  345  5e-94  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.623296 
 
 
-
 
NC_009483  Gura_1952  hydrogenase expression/formation protein HypD  49.18 
 
 
363 aa  344  1e-93  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0795  hydrogenase expression/formation protein HypD  46.47 
 
 
377 aa  343  2e-93  Trichodesmium erythraeum IMS101  Bacteria  normal  0.912366  normal 
 
 
-
 
NC_007413  Ava_4604  hydrogenase formation HypD protein  45.73 
 
 
383 aa  342  5.999999999999999e-93  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_2177  hydrogenase expression/formation protein HypD  46.2 
 
 
377 aa  340  2.9999999999999998e-92  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.380266 
 
 
-
 
NC_002936  DET1434  hydrogenase expression/formation protein HypD  46.39 
 
 
364 aa  338  5.9999999999999996e-92  Dehalococcoides ethenogenes 195  Bacteria  normal  0.736513  n/a   
 
 
-
 
NC_012912  Dd1591_1419  hydrogenase expression/formation protein HypD  47.28 
 
 
371 aa  338  7e-92  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3823  hydrogenase expression/formation  47.24 
 
 
375 aa  338  8e-92  Streptosporangium roseum DSM 43021  Bacteria  normal  0.786204  normal  0.0677682 
 
 
-
 
NC_013552  DhcVS_1216  hydrogenase maturation factor  46.11 
 
 
364 aa  337  1.9999999999999998e-91  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_1762  hydrogenase expression/formation protein HypD  47.63 
 
 
367 aa  336  2.9999999999999997e-91  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_1242  hydrogenase expression/formation protein HypD  46.11 
 
 
364 aa  336  5e-91  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2049  hydrogenase expression/formation protein HypD  48.19 
 
 
364 aa  333  3e-90  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008036  Sala_3210  hydrogenase expression/formation protein HypD  46.32 
 
 
377 aa  332  6e-90  Sphingopyxis alaskensis RB2256  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_4588  hydrogenase expression/formation protein HypD  49.4 
 
 
375 aa  332  6e-90  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_2405  hydrogenase expression/formation protein HypD  46.94 
 
 
366 aa  332  9e-90  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.200766 
 
 
-
 
NC_008146  Mmcs_2134  hydrogenase expression/formation protein HypD  47.22 
 
 
366 aa  331  1e-89  Mycobacterium sp. MCS  Bacteria  normal  0.599593  n/a   
 
 
-
 
NC_008705  Mkms_2180  hydrogenase expression/formation protein HypD  47.22 
 
 
366 aa  331  1e-89  Mycobacterium sp. KMS  Bacteria  normal  normal  0.483426 
 
 
-
 
NC_013159  Svir_08040  hydrogenase expression/formation protein HypD  46.28 
 
 
380 aa  330  2e-89  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2121  hydrogenase expression/formation protein HypD  47.22 
 
 
366 aa  330  2e-89  Mycobacterium sp. JLS  Bacteria  normal  0.164899  normal  0.0352453 
 
 
-
 
NC_007777  Francci3_1947  hydrogenase expression/formation protein HypD  46.39 
 
 
402 aa  330  3e-89  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4557  hydrogenase expression/formation protein HypD  45.82 
 
 
389 aa  330  3e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2538  hydrogenase expression/formation protein HypD  46.13 
 
 
371 aa  329  4e-89  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_2525  hydrogenase expression/formation protein HypD  45.92 
 
 
371 aa  327  1.0000000000000001e-88  Dickeya dadantii Ech703  Bacteria  normal  0.222339  n/a   
 
 
-
 
NC_007512  Plut_1455  hydrogenase formation HypD protein  46.8 
 
 
362 aa  328  1.0000000000000001e-88  Chlorobium luteolum DSM 273  Bacteria  normal  0.472056  normal 
 
 
-
 
NC_008639  Cpha266_0724  hydrogenase expression/formation protein HypD  45.96 
 
 
363 aa  328  1.0000000000000001e-88  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.151882  n/a   
 
 
-
 
NC_009429  Rsph17025_3362  hydrogenase assembly chaperone hypC/hupF  45.28 
 
 
379 aa  327  1.0000000000000001e-88  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.203707 
 
 
-
 
NC_007953  Bxe_C0537  hydrogenase formation protein HypD  45.14 
 
 
396 aa  325  6e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1070  hydrogenase expression/formation protein HypD  46.67 
 
 
368 aa  325  7e-88  Frankia sp. CcI3  Bacteria  normal  0.250969  normal 
 
 
-
 
NC_011059  Paes_1641  hydrogenase expression/formation protein HypD  47.22 
 
 
364 aa  324  1e-87  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3981  hydrogenase expression/formation protein HypD  47.37 
 
 
366 aa  324  2e-87  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.963935  normal  0.745902 
 
 
-
 
NC_008726  Mvan_2361  hydrogenase expression/formation protein HypD  45.83 
 
 
367 aa  323  3e-87  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.255752  normal  0.11293 
 
 
-
 
NC_009485  BBta_0474  hydrogenase expression/formation  45.23 
 
 
382 aa  323  3e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.982251  normal  0.264843 
 
 
-
 
NC_009720  Xaut_2186  hydrogenase expression/formation protein HypD  46.05 
 
 
374 aa  323  3e-87  Xanthobacter autotrophicus Py2  Bacteria  normal  0.185739  normal  0.302113 
 
 
-
 
NC_009921  Franean1_2485  hydrogenase expression/formation protein HypD  44.9 
 
 
378 aa  322  6e-87  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3878  hydrogenase expression/formation protein HypD  44.85 
 
 
365 aa  322  6e-87  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_4099  hydrogenase expression/formation protein HypD  43.75 
 
 
376 aa  322  9.000000000000001e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1539  hydrogenase expression/formation protein HypD  44.29 
 
 
380 aa  321  9.999999999999999e-87  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.000400183  normal  0.116221 
 
 
-
 
NC_011661  Dtur_0089  hydrogenase expression/formation protein HypD  43.52 
 
 
352 aa  321  9.999999999999999e-87  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_0479  hydrogenase expression/formation protein HypD  45.15 
 
 
371 aa  321  9.999999999999999e-87  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0595509  normal  0.140537 
 
 
-
 
NC_009523  RoseRS_0974  hydrogenase expression/formation protein HypD  44.29 
 
 
371 aa  321  9.999999999999999e-87  Roseiflexus sp. RS-1  Bacteria  normal  0.980322  normal 
 
 
-
 
NC_009767  Rcas_3796  hydrogenase expression/formation protein HypD  45.13 
 
 
371 aa  321  9.999999999999999e-87  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.44763  normal  0.895026 
 
 
-
 
NC_007514  Cag_0530  hydrogenase formation HypD protein  45.96 
 
 
361 aa  320  1.9999999999999998e-86  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1783  hydrogenase expression/formation protein HypD  45.4 
 
 
365 aa  317  2e-85  Chlorobium limicola DSM 245  Bacteria  normal  0.146448  n/a   
 
 
-
 
NC_009049  Rsph17029_2160  hydrogenase expression/formation protein HypD  44.09 
 
 
379 aa  316  4e-85  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.397943  normal  0.045019 
 
 
-
 
NC_011206  Lferr_0863  hydrogenase expression/formation protein HypD  44.41 
 
 
381 aa  316  5e-85  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.948564  normal 
 
 
-
 
NC_010524  Lcho_2448  hydrogenase expression/formation protein HypD  42.66 
 
 
379 aa  316  5e-85  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0276504 
 
 
-
 
NC_011761  AFE_0715  hydrogenase expression/formation protein HypD  44.41 
 
 
381 aa  316  5e-85  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3966  hydrogenase formation HypD protein  43.48 
 
 
374 aa  315  6e-85  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2025  hydrogenase expression/formation protein HypD  41.76 
 
 
372 aa  313  1.9999999999999998e-84  Shewanella pealeana ATCC 700345  Bacteria  normal  0.657636  n/a   
 
 
-
 
NC_010644  Emin_0389  hydrogenase formation HypD protein  46.38 
 
 
346 aa  314  1.9999999999999998e-84  Elusimicrobium minutum Pei191  Bacteria  normal  0.483899  hitchhiker  0.0000000115047 
 
 
-
 
NC_010571  Oter_4509  hydrogenase expression/formation protein HypD  45 
 
 
364 aa  313  1.9999999999999998e-84  Opitutus terrae PB90-1  Bacteria  normal  0.629717  normal  0.249783 
 
 
-
 
NC_007973  Rmet_1282  hydrogenase expression/formation protein HypD  44.29 
 
 
387 aa  313  2.9999999999999996e-84  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.467018 
 
 
-
 
NC_011666  Msil_3751  hydrogenase expression/formation protein HypD  45.5 
 
 
385 aa  313  2.9999999999999996e-84  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_0892  hydrogenase expression/formation protein HypD  43.84 
 
 
369 aa  313  3.9999999999999997e-84  Cyanothece sp. PCC 8802  Bacteria  normal  0.26538  normal  0.532572 
 
 
-
 
NC_011726  PCC8801_0866  hydrogenase expression/formation protein HypD  43.84 
 
 
369 aa  313  3.9999999999999997e-84  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007796  Mhun_0502  hydrogenase expression/formation protein HypD  47.66 
 
 
342 aa  313  3.9999999999999997e-84  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.539415 
 
 
-
 
NC_010627  Bphy_7252  hydrogenase expression/formation protein HypD  42.27 
 
 
376 aa  312  4.999999999999999e-84  Burkholderia phymatum STM815  Bacteria  normal  0.530121  normal  0.519076 
 
 
-
 
NC_007493  RSP_0509  hydrogenase isoenzyme formation protein HypD  43.55 
 
 
379 aa  311  7.999999999999999e-84  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.20958  n/a   
 
 
-
 
NC_008687  Pden_3111  hydrogenase expression/formation protein HypD  44.2 
 
 
378 aa  311  9e-84  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_3290  hydrogenase expression/formation protein HypD  43.01 
 
 
370 aa  310  4e-83  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.138162  n/a   
 
 
-
 
NC_011206  Lferr_2888  hydrogenase expression/formation protein HypD  43.01 
 
 
370 aa  310  4e-83  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  0.270319  normal  0.416218 
 
 
-
 
NC_012560  Avin_50450  hydrogenase expression/formation protein HypD  44.96 
 
 
379 aa  309  4e-83  Azotobacter vinelandii DJ  Bacteria  normal  0.0216438  n/a   
 
 
-
 
NC_010581  Bind_1163  hydrogenase expression/formation protein HypD  43.78 
 
 
373 aa  308  1.0000000000000001e-82  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.362007  normal 
 
 
-
 
NC_008009  Acid345_1705  hydrogenase expression/formation protein HypD  44.17 
 
 
371 aa  307  2.0000000000000002e-82  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.340264 
 
 
-
 
NC_009441  Fjoh_3912  hydrogenase expression/formation protein HypD  42.18 
 
 
358 aa  307  2.0000000000000002e-82  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3167  hydrogenase expression/formation protein HypD  43.75 
 
 
373 aa  306  2.0000000000000002e-82  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.54116 
 
 
-
 
NC_013512  Sdel_1096  hydrogenase expression/formation protein HypD  44.48 
 
 
375 aa  306  4.0000000000000004e-82  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1960  hydrogenase expression/formation protein HypD  41.85 
 
 
381 aa  306  4.0000000000000004e-82  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2812  HypD' protein  41.85 
 
 
380 aa  305  8.000000000000001e-82  Methylibium petroleiphilum PM1  Bacteria  normal  0.33874  normal 
 
 
-
 
NC_009832  Spro_2438  hydrogenase expression/formation protein HypD  43.75 
 
 
375 aa  305  9.000000000000001e-82  Serratia proteamaculans 568  Bacteria  normal  0.841685  normal 
 
 
-
 
NC_011149  SeAg_B2979  hydrogenase expression/formation protein HypD  43.48 
 
 
373 aa  304  1.0000000000000001e-81  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3202  hydrogenase expression/formation protein HypD  44.84 
 
 
373 aa  305  1.0000000000000001e-81  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3401  hydrogenase expression/formation protein HypD  44.13 
 
 
362 aa  305  1.0000000000000001e-81  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_003912  CJE0728  hydrogenase expression/formation protein HypD  42.62 
 
 
363 aa  303  2.0000000000000002e-81  Campylobacter jejuni RM1221  Bacteria  normal  0.730709  n/a   
 
 
-
 
NC_011094  SeSA_A3010  hydrogenase expression/formation protein HypD  43.48 
 
 
373 aa  304  2.0000000000000002e-81  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.0121533 
 
 
-
 
NC_011080  SNSL254_A3062  hydrogenase expression/formation protein HypD  43.48 
 
 
373 aa  303  2.0000000000000002e-81  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0891521 
 
 
-
 
NC_008340  Mlg_2015  hydrogenase expression/formation protein HypD  42.12 
 
 
378 aa  303  4.0000000000000003e-81  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
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