| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_2025 |
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| Symbol | |
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| ID | 5662418 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | - |
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| Start bp | 2450325 |
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| End bp | 2451443 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641236620 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_001501880 |
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| Protein GI | 157961846 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.657636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTGGTC TAACAGATCT ATACAAGGGC TTTAGGGATC CCAAAGTCAT ACGCTCCTTA
GCTAAAGAGA TAGCCACTCA AGCAAACTTG CTCGACGGTA AGATTAATAT AATGGAAGTA
TGCGGCGGCC ATACTCACAC CATAATGAAG TACGGTTTAA ACCAGCTCTT ACCAGACAAT
ATCGATTTTA TCCATGGGCC GGGCTGTCCT GTTTGTATCA TGCCAAAAGA GCGAATCGAT
CATGCCGCCG CACTGGCGAG CATGCCCAAT TCCATTTTGG TTACCCTTGG TGACATGATC
CGTGTACCAG GATCGAAAGG AAGCTTGGCA CAGCACAGAG CAAGTGGTTG TGATATTCGG
CCTATTTACG ATCCGCTAGA TACCTTACAG ATCGCTATCG ATAATCCTGA TAAAACCGTC
ATTTTCTTCG CGATTGGTTT TGAAACCTCG AGCCCTATGA CAGCGGTTCT TATTGACCAA
GCAGAAAAGC GTGATATCAA AAACCTTGTA TTTCACATTA ACCACGTGCT TGTCCCTCCC
GCTATTGATG CCGTTATGGC CGATCCCAAG GTTAAAGTGA ATGCCTTTAT TGGACCGTCC
CATGTCAGCG TCATTAGTGG TGCGAAAGTC TACCGACCAG CAGTAAACAA CTATAACACT
CCAGTGGTCA TCTCAGGCTT TGAGCCTGTC GATGTCATGC AGTCAATTTT GATGATTGTA
AAGCAAAAAG TGGCCTCGAA GGCGGAGCTA GAGAATCAGT ACAGTCGCTC TGTTTCAGAA
GATGGCAACC TTGCCGCCCA AGAGATGGTA AACCGCTATT TTAAAGTAAG AGATAACTTT
CGCTGGCGAG GTCTTGGCCC AATCCCCTCT TCTGCTTTGA TATTAAGAGA TAAATATGCT
CATAGAGACG CCGAACGTCT TTTTGCTGAG TTTCTCCCAA GTGAGGAGAT TGACGATCAT
AAAGCCTGTC AGTGCGGTGA TATTCTTCGT GGTTTATGTA AGCCCAAAGA CTGTAAGGTA
TTTGGGCGTG GCTGTACACC TGAAACGCCA TTAGGCAGTT GTATGGTCAG CTCTGAGGGC
GCTTGCAACG CTTACTATCG CTATAACGGA GTATTGTAA
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| Protein sequence | MIGLTDLYKG FRDPKVIRSL AKEIATQANL LDGKINIMEV CGGHTHTIMK YGLNQLLPDN
IDFIHGPGCP VCIMPKERID HAAALASMPN SILVTLGDMI RVPGSKGSLA QHRASGCDIR
PIYDPLDTLQ IAIDNPDKTV IFFAIGFETS SPMTAVLIDQ AEKRDIKNLV FHINHVLVPP
AIDAVMADPK VKVNAFIGPS HVSVISGAKV YRPAVNNYNT PVVISGFEPV DVMQSILMIV
KQKVASKAEL ENQYSRSVSE DGNLAAQEMV NRYFKVRDNF RWRGLGPIPS SALILRDKYA
HRDAERLFAE FLPSEEIDDH KACQCGDILR GLCKPKDCKV FGRGCTPETP LGSCMVSSEG
ACNAYYRYNG VL
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