| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_2448 |
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| Symbol | |
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| ID | 6161641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 2656247 |
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| End bp | 2657386 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641665218 |
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| Product | hydrogenase expression/formation protein HypD |
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| Protein accession | YP_001791478 |
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| Protein GI | 171059129 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0409] Hydrogenase maturation factor |
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| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0276504 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACA TCGACGAATT TCGTGATGGC GACGTGGCCC GCCGCATCGC CGAGCGGCTG
GCGGCCGAGG TCGACCCGGC GCGCCACTAC AGCTTCATGG AGTTCTGCGG CGGCCACACG
CACGCGATCT CGCGTTACGG CATCGCCGAG CTGCTGCCCG CCAATGTGCG CATGGTGCAC
GGCCCGGGCT GCCCGGTATG CGTGCTGCCG ATCGGCCGCA TCGACCTGGC CATCGACCTG
GCGCTCAACC GCGGCGTGAT CCTGTGCACC TATGGCGACG TGATGCGGGT GCCGGCGTCA
GAATCGCTTT CATTGATGCG CGCCAAGGCC CGCGGCGCCG ACATCCGCAT GATCTATTCG
GCGGCTGACG CGGTGAAGCT TGCGCGTGAA AATCCGGGCC GTGAAGTCGT CTTCCTGGCC
ATCGGCTTCG AGACCACCAC GCCGCCCACC GCACTCGTGA TCCGCCAGGC CGCGAAGGAG
CAGCTCGGCA ACTTCAGCGT GCTGAGCAAC CACGTGCTGA CGCCCAGCGC GATCACGCAC
ATCCTCGAAT CGCCCGAGGT GCGCCAGTAC GGCACCGTGC CGATCGACGG TTTCATCGGC
CCGGCGCACG TCAGCATCGT GATCGGCTCG CGGCCCTACG AACACTTCGC CGAGGAGTAT
CAGAAGCCCG TGGTCATCGC CGGCTTCGAG CCGCTCGACG TGATGCAGGC GGTGCTGATG
CTGGTGCGCC AGGTCAATCA AGGCCGCACC GAGGTCGAAA ACGAGTTCAC CCGCGCCGTC
ACGCGCGACG GCAACCTGGC CGCGCAGGCG GTCGTCTCCG AGGTGTTCGA ACTGCGCAGC
AGCTTCGAGT GGCGCGGCCT GGGCGAGGTG CCGTACAGCG CGCTGAAGAT CCGCCCGGCC
TACGCCGCCT TCGACGCCGA ACGGCGCTTC GAGCTGACCT ACCAGCCGGT GCCCGACCAC
AAGCAGTGCG AATGCGGCGC GATCCTGCGG GGTGTCAAGA AGCCGACCGA CTGCAAGCTC
TTCGGCACGG TCTGCACGCC CGAGAACCCG ATGGGCTCGT GCATGGTGTC GTCCGAAGGC
GCCTGCGCGG CGCACTACTC GTACGGGCGC TTCCGTGACA TCCCCGTGGT GGCCGCATGA
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| Protein sequence | MKYIDEFRDG DVARRIAERL AAEVDPARHY SFMEFCGGHT HAISRYGIAE LLPANVRMVH
GPGCPVCVLP IGRIDLAIDL ALNRGVILCT YGDVMRVPAS ESLSLMRAKA RGADIRMIYS
AADAVKLARE NPGREVVFLA IGFETTTPPT ALVIRQAAKE QLGNFSVLSN HVLTPSAITH
ILESPEVRQY GTVPIDGFIG PAHVSIVIGS RPYEHFAEEY QKPVVIAGFE PLDVMQAVLM
LVRQVNQGRT EVENEFTRAV TRDGNLAAQA VVSEVFELRS SFEWRGLGEV PYSALKIRPA
YAAFDAERRF ELTYQPVPDH KQCECGAILR GVKKPTDCKL FGTVCTPENP MGSCMVSSEG
ACAAHYSYGR FRDIPVVAA
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