| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3796 |
|---|
| Symbol | |
|---|
| ID | 5541298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 4968093 |
|---|
| End bp | 4969208 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640895906 |
|---|
| Product | hydrogenase expression/formation protein HypD |
|---|
| Protein accession | YP_001433853 |
|---|
| Protein GI | 156743724 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.44763 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.895026 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACC TGGACGAATA TCGCGACCCG GATCTGGCGC AGCGGCTTTT TGCCGAGATT
CGTCGCATCA CGACGCGCCC CTGGGCGATC ATGGAAGTGT GCGGCGGGCA GACGCATTCG
ATTATCCGCA ACGGAATCGA TCAACTGTTG CCAGAAGCGA TTGAGCTGAT CCACGGTCCT
GGCTGCCCGG TGTGCGTGAC GCCGCTGGAG ATTATCGACA AGGCGCTGGC AATCGCTTCC
CGTCCCAACG TTATTTTCTG TTCGTTTGGC GATATGCTGC GCGTGCCGGG GAGTGCGAAA
GACCTGTTCC GCGTCAAGAG CGAAGGCGGT GATGTGCGTG TGGTGTATTC ACCGCTCGAT
GCCGTGCGCC TGGCGCAGCA GCACCCCGAC CGTGAGGTGG TCTTCTTTGG CATTGGTTTC
GAGACGACTG CTCCCGCCAA CGCAATGGCA GTGTTGCAGG CGCACCGCCT GGGATTGCGC
AATTTTTCGA TGCTGGTGTC GCACGTGCTG GTGCCACCCG CCATCTCCGC CATCATGGAG
TCGCCGACGA ACCGTGTGCA AGGATTCCTG GCAGCCGGGC ATGTGTGCAG CGTGATGGGC
ACCTGGCAGT ACCGGCCGCT GGTTGAACGG TACCATGTGC CAATTGTTGT CACCGGTTTC
GAGCCGCTCG ACGTACTGGA AGGGATCCGC CGCGTCGTTC TGCAACTGGA AGCGGGACGC
GCCGAACTCG ACAACGCCTA TGAGCGTGCC GTGCGACCGG AAGGGAACGT CGCGGCGCAA
CAGGTGCTGT CTGAGGTCTT TGAGGTGACC GACCGGGCAT GGCGCGGCAT CGGCGTTATC
CCGCAGAGCG GTTGGCGCCT GCGCAACGCC TACCGCGCCT ACGACGCCGA GGCGCGCTTC
GCGGTTGGCG ACATTCAGAC GCGCGAGTCG CCAATCTGCC GCAGCGGTGA GGTGCTTCAG
GGTATGCTCA AGCCCAATCA GTGCCCGGCG TTCGGCAAGG AATGCACCCC GCGCACGCCC
CTTGGCGCAA CGATGGTGTC GAGCGAAGGG GCATGCGCTG CGTACTATCA GTACGGACGG
TTCATCAAGG CTGAAGAGGT GGGAGTCGCG CGATGA
|
|---|
| Protein sequence | MKYLDEYRDP DLAQRLFAEI RRITTRPWAI MEVCGGQTHS IIRNGIDQLL PEAIELIHGP
GCPVCVTPLE IIDKALAIAS RPNVIFCSFG DMLRVPGSAK DLFRVKSEGG DVRVVYSPLD
AVRLAQQHPD REVVFFGIGF ETTAPANAMA VLQAHRLGLR NFSMLVSHVL VPPAISAIME
SPTNRVQGFL AAGHVCSVMG TWQYRPLVER YHVPIVVTGF EPLDVLEGIR RVVLQLEAGR
AELDNAYERA VRPEGNVAAQ QVLSEVFEVT DRAWRGIGVI PQSGWRLRNA YRAYDAEARF
AVGDIQTRES PICRSGEVLQ GMLKPNQCPA FGKECTPRTP LGATMVSSEG ACAAYYQYGR
FIKAEEVGVA R
|
|---|
| |