| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_0509 |
|---|
| Symbol | hypD |
|---|
| ID | 3718460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007493 |
|---|
| Strand | + |
|---|
| Start bp | 2242832 |
|---|
| End bp | 2243971 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640071717 |
|---|
| Product | hydrogenase isoenzyme formation protein HypD |
|---|
| Protein accession | YP_353581 |
|---|
| Protein GI | 77464077 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0409] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00075] hydrogenase expression/formation protein HypD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.20958 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCG CGTCCGAGTT CCGCGATCCC GCCCTCGCGC GGAGCCTTCT GGCGGCCATC
GCCGCGCGCG CCGACGAGAT CGGCGCCACC CGCGCCCGCC CGCTGCACAT CATGGAGATC
TGCGGCGGCC ACACCCACGC GATCTTCCGC TACGGGCTCG ACCGGCTGGT GCATGAGGGG
ATCGAATTCA TCCACGGCCC CGGCTGCCCG GTCTGCGTCC TGCCGATGGG CCGGGTCGAC
GAATGCATCG CCATCGCCGA GCGGCCCGAG GTGATCTTCA CCACCTTCGG CGATGCGATG
CGCGTGCCGG GGGCGCGCGG CTCGCTCTTG CAGGCCAAGG CACGCGGCGC GGACATCCGC
ATGGTCTATT CGCCGCTCGA CGCGCTCGAG ATCGCGCGGC GCAATCCTGC GCGCGAGGTG
GTCTTCTTCG GCCTCGGCTT CGAGACGACG ACGCCCTCGA CCGCCCTCTC GATCCAGCAG
GCGGCGCGGG AGGAGCTCTT CAACTTCAGC GTCTTCTGCA ACCACATCAC CGTGCCCGAG
CCGATCCGGG CGTTGCTCGA CGATCCCGAC ATGCGGCTCG ACGGCTTCAT CGGGCCCGGC
CATGTCTCGA TGGTGATCGG CATCCATGCC TACGATTTCG TGGCCCGCGA CTATTCCAAG
CCCCTCGTCG TGGCGGGCTT CGAGCCCACG GACCTCCTGC AATCGGTGCT GATGGTGCTG
GACCAGATCG CCGAGGGCCG CTCGGTGATC GAGAACCAGT ATGCCCGCGT GGTGCCCGAG
CACGGCAATC CGGTCAGCCT CGCCGCCATC GCCGACGTCT ACGAGCGGCG GCCGAGCTTC
GAATGGCGGG GCCTCGGCGA GATCGACGCC TCGGGCCTGC GTATCCGCGA GACCTATGCA
GCCTTCGATG CCGAACGGAA GTTCGGGATC GGCTACGGCA CTCCGGCCGC GCCCCGGCAG
GAGCCCGAGG GATGTGCCTG CGGCGCGGTG ATGACCGGCC GGATCAAGCC CCCCGCCTGC
CCGCAGTTCG GCCGCGGCTG CACGCCCGAG ATGCCGCTCG GCGCGCTGAT GGTGAGTTCG
GAAGGCGCCT GCGCGGCCTA CTGGCAATAT GCCGGCGCGC GCGGGCTGGC CGCGGAATAG
|
|---|
| Protein sequence | MKFASEFRDP ALARSLLAAI AARADEIGAT RARPLHIMEI CGGHTHAIFR YGLDRLVHEG
IEFIHGPGCP VCVLPMGRVD ECIAIAERPE VIFTTFGDAM RVPGARGSLL QAKARGADIR
MVYSPLDALE IARRNPAREV VFFGLGFETT TPSTALSIQQ AAREELFNFS VFCNHITVPE
PIRALLDDPD MRLDGFIGPG HVSMVIGIHA YDFVARDYSK PLVVAGFEPT DLLQSVLMVL
DQIAEGRSVI ENQYARVVPE HGNPVSLAAI ADVYERRPSF EWRGLGEIDA SGLRIRETYA
AFDAERKFGI GYGTPAAPRQ EPEGCACGAV MTGRIKPPAC PQFGRGCTPE MPLGALMVSS
EGACAAYWQY AGARGLAAE
|
|---|
| |