More than 300 homologs were found in PanDaTox collection
for query gene Cpin_1440 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  100 
 
 		 208 aa  426  1e-118  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  44 
 
 		 205 aa  172  2.9999999999999996e-42  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  44.78 
 
 		 206 aa  165  5e-40  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal  1 
 
 
-
 
NC_013132  Cpin_2137  two component transcriptional regulator, LuxR family  41.18 
 
 		 211 aa  159  2e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0335187  normal  1 
 
 
-
 
NC_013132  Cpin_4278  two component transcriptional regulator, LuxR family  38.35 
 
 		 213 aa  156  2e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.0894003 
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  38.16 
 
 		 207 aa  152  2.9999999999999998e-36  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  37.13 
 
 		 208 aa  140  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  36.84 
 
 		 213 aa  140  9.999999999999999e-33  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  35.29 
 
 		 207 aa  139  3e-32  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  38.28 
 
 		 211 aa  133  1.9999999999999998e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  34.15 
 
 		 213 aa  131  6e-30  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  34.15 
 
 		 213 aa  131  6e-30  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  31.13 
 
 		 214 aa  126  2.0000000000000002e-28  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_011368  Rleg2_4527  two component transcriptional regulator, LuxR family  34.63 
 
 		 223 aa  126  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  0.658241 
 
 
-
 
NC_010002  Daci_5322  two component LuxR family transcriptional regulator  37.44 
 
 		 220 aa  126  2.0000000000000002e-28  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.929677 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  35.48 
 
 		 221 aa  126  3e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  32.2 
 
 		 211 aa  125  5e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_012854  Rleg_6399  two component transcriptional regulator, LuxR family  33.5 
 
 		 214 aa  125  6e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  0.139442 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  31.1 
 
 		 210 aa  124  7e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  32.09 
 
 		 224 aa  124  1e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal  1 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  32.86 
 
 		 215 aa  124  1e-27  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  34.12 
 
 		 216 aa  123  2e-27  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  32.86 
 
 		 215 aa  123  2e-27  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  33.81 
 
 		 222 aa  123  2e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  32.39 
 
 		 215 aa  123  2e-27  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  31.1 
 
 		 210 aa  123  2e-27  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  31.1 
 
 		 210 aa  123  2e-27  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  30.58 
 
 		 221 aa  122  3e-27  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  31.88 
 
 		 215 aa  122  4e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  32.39 
 
 		 215 aa  122  5e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  33.8 
 
 		 215 aa  122  5e-27  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  31.46 
 
 		 215 aa  122  6e-27  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  32.7 
 
 		 210 aa  121  6e-27  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.458284 
 
 
-
 
NC_008255  CHU_1317  response regulator  30.41 
 
 		 220 aa  121  7e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  29.81 
 
 		 211 aa  121  8e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  34.3 
 
 		 213 aa  120  1.9999999999999998e-26  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011894  Mnod_0855  two component transcriptional regulator, LuxR family  29.61 
 
 		 223 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.082304  n/a   
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  32.86 
 
 		 210 aa  120  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  0.612124 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  33.49 
 
 		 235 aa  119  3.9999999999999996e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_009667  Oant_0443  two component LuxR family transcriptional regulator  33.82 
 
 		 213 aa  119  3.9999999999999996e-26  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  1  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  31.88 
 
 		 215 aa  119  3.9999999999999996e-26  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_008825  Mpe_A1026  response regulator protein  32.02 
 
 		 217 aa  118  4.9999999999999996e-26  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  33.33 
 
 		 214 aa  118  7e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  33.17 
 
 		 207 aa  118  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  30.19 
 
 		 218 aa  117  9e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  31.13 
 
 		 222 aa  117  9.999999999999999e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal  1 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  31.02 
 
 		 219 aa  117  9.999999999999999e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_007347  Reut_A3419  LuxR response regulator receiver  33.01 
 
 		 231 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.393456  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  33.01 
 
 		 209 aa  117  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  32.7 
 
 		 223 aa  117  9.999999999999999e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  31.73 
 
 		 215 aa  117  9.999999999999999e-26  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal  1 
 
 
-
 
NC_007954  Sden_1436  response regulator  30.62 
 
 		 214 aa  117  9.999999999999999e-26  Shewanella denitrificans OS217  Bacteria  normal  0.794512  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  29.52 
 
 		 214 aa  117  9.999999999999999e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  31.28 
 
 		 210 aa  117  9.999999999999999e-26  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  33 
 
 		 219 aa  116  1.9999999999999998e-25  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  30.73 
 
 		 218 aa  115  3.9999999999999997e-25  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  31.16 
 
 		 216 aa  115  3.9999999999999997e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013421  Pecwa_1775  two component transcriptional regulator, LuxR family  31.4 
 
 		 209 aa  115  5e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  0.814588  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.63 
 
 		 224 aa  115  5e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  33.49 
 
 		 228 aa  115  5e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal  1 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  29.76 
 
 		 206 aa  115  5e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.09 
 
 		 238 aa  115  5e-25  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  30.69 
 
 		 226 aa  115  5e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  29.72 
 
 		 222 aa  115  5e-25  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_009052  Sbal_2562  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
NC_009997  Sbal195_2677  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  32.5 
 
 		 210 aa  115  6e-25  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal  1 
 
 
-
 
NC_009665  Shew185_2600  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  31.6 
 
 		 220 aa  115  6e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  32.5 
 
 		 210 aa  115  6e-25  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1782  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_008321  Shewmr4_1547  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000288339  normal  1 
 
 
-
 
NC_009708  YpsIP31758_3833  putative DNA-binding response regulator EsrB  32.5 
 
 		 210 aa  115  6e-25  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  1  n/a   
 
 
-
 
NC_008577  Shewana3_1608  response regulator  30.62 
 
 		 214 aa  115  6e-25  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000660452  normal  0.150334 
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  34.63 
 
 		 219 aa  115  6e-25  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  1  normal  0.92254 
 
 
-
 
NC_012917  PC1_1369  two component transcriptional regulator, LuxR family  30.92 
 
 		 218 aa  115  6e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.380225  n/a   
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  27.78 
 
 		 218 aa  114  7.999999999999999e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  28.84 
 
 		 217 aa  114  7.999999999999999e-25  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008322  Shewmr7_1614  response regulator  30.14 
 
 		 214 aa  114  7.999999999999999e-25  Shewanella sp. MR-7  Bacteria  unclonable  0.000000746753  normal  0.505035 
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  28.84 
 
 		 217 aa  114  7.999999999999999e-25  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  31.78 
 
 		 250 aa  114  8.999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_009831  Ssed_2455  response regulator  31.58 
 
 		 214 aa  114  8.999999999999998e-25  Shewanella sediminis HAW-EB3  Bacteria  normal  0.140183  normal  0.431169 
 
 
-
 
NC_010511  M446_5717  two component LuxR family transcriptional regulator  29.91 
 
 		 220 aa  114  1.0000000000000001e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  hitchhiker  0.00405289 
 
 
-
 
NC_004347  SO_1860  response regulator  30.62 
 
 		 214 aa  114  1.0000000000000001e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  32.52 
 
 		 206 aa  114  1.0000000000000001e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  30.73 
 
 		 218 aa  114  1.0000000000000001e-24  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  31.55 
 
 		 217 aa  114  1.0000000000000001e-24  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  30.88 
 
 		 208 aa  114  1.0000000000000001e-24  Nitrosospira multiformis ATCC 25196  Bacteria  normal  1  n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  30.24 
 
 		 217 aa  114  1.0000000000000001e-24  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  31.13 
 
 		 210 aa  114  1.0000000000000001e-24  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008345  Sfri_2649  response regulator  30.14 
 
 		 214 aa  114  1.0000000000000001e-24  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  30.73 
 
 		 218 aa  114  1.0000000000000001e-24  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  30.14 
 
 		 210 aa  113  2.0000000000000002e-24  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  30.14 
 
 		 210 aa  113  2.0000000000000002e-24  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_1953  response regulator  30.62 
 
 		 214 aa  114  2.0000000000000002e-24  Shewanella pealeana ATCC 700345  Bacteria  hitchhiker  0.00404481  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>