More than 300 homologs were found in PanDaTox collection
for query gene Cpin_4278 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013132  Cpin_4278  two component transcriptional regulator, LuxR family  100 
 
 		 213 aa  438  9.999999999999999e-123  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  0.0894003 
 
 
-
 
NC_013132  Cpin_2137  two component transcriptional regulator, LuxR family  51.22 
 
 		 211 aa  214  9.999999999999999e-55  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0335187  normal  1 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  42.51 
 
 		 206 aa  176  2e-43  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal  1 
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  36.41 
 
 		 207 aa  166  4e-40  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  39.81 
 
 		 207 aa  162  3e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.126193 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  39.81 
 
 		 205 aa  161  6e-39  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  39.13 
 
 		 208 aa  160  9e-39  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  39.5 
 
 		 211 aa  160  9e-39  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  38.35 
 
 		 208 aa  156  2e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  34.62 
 
 		 211 aa  132  3.9999999999999996e-30  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  34.95 
 
 		 212 aa  128  6e-29  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  34.55 
 
 		 224 aa  127  9.000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  34.45 
 
 		 211 aa  126  2.0000000000000002e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008255  CHU_1317  response regulator  33.49 
 
 		 220 aa  126  3e-28  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  34.42 
 
 		 218 aa  125  7e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  31.43 
 
 		 214 aa  124  1e-27  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  30.56 
 
 		 225 aa  123  2e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  33.8 
 
 		 213 aa  123  3e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  35.18 
 
 		 222 aa  122  4e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  34.74 
 
 		 215 aa  122  4e-27  Spirosoma linguale DSM 74  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  32.39 
 
 		 212 aa  122  4e-27  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  32.85 
 
 		 216 aa  122  5e-27  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  32.86 
 
 		 213 aa  122  5e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  32.41 
 
 		 220 aa  122  6e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  36.19 
 
 		 210 aa  120  1.9999999999999998e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  34.45 
 
 		 207 aa  119  3e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  36.19 
 
 		 210 aa  119  3e-26  Ralstonia pickettii 12D  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  35.71 
 
 		 216 aa  119  3e-26  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal  1 
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  32.72 
 
 		 223 aa  119  3e-26  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  33.33 
 
 		 218 aa  119  3.9999999999999996e-26  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  35.41 
 
 		 216 aa  119  4.9999999999999996e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  36.19 
 
 		 210 aa  119  4.9999999999999996e-26  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  32.23 
 
 		 209 aa  118  4.9999999999999996e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.03 
 
 		 225 aa  118  6e-26  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  32.51 
 
 		 225 aa  118  7e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  33.33 
 
 		 215 aa  118  7.999999999999999e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  31.92 
 
 		 215 aa  117  9.999999999999999e-26  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  32.86 
 
 		 218 aa  117  9.999999999999999e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_013159  Svir_39510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.05 
 
 		 216 aa  117  9.999999999999999e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.657091 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  33.49 
 
 		 215 aa  117  9.999999999999999e-26  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  34.74 
 
 		 218 aa  117  9.999999999999999e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal  1 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  30.67 
 
 		 241 aa  117  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  32.86 
 
 		 218 aa  117  9.999999999999999e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  33.64 
 
 		 221 aa  117  1.9999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  30.62 
 
 		 220 aa  116  1.9999999999999998e-25  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  29.09 
 
 		 215 aa  116  1.9999999999999998e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  31.88 
 
 		 223 aa  116  1.9999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  33.5 
 
 		 213 aa  115  3e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.624898 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  29.36 
 
 		 215 aa  116  3e-25  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  29.36 
 
 		 215 aa  116  3e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  29.36 
 
 		 215 aa  116  3e-25  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  29.36 
 
 		 215 aa  116  3e-25  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  29.36 
 
 		 215 aa  116  3e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  33.18 
 
 		 216 aa  116  3e-25  Geobacter bemidjiensis Bem  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  34.43 
 
 		 218 aa  116  3e-25  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  33.49 
 
 		 219 aa  116  3e-25  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009456  VC0395_0622  transcriptional regulator UhpA  32.04 
 
 		 208 aa  116  3e-25  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  33.01 
 
 		 206 aa  115  5e-25  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  30.39 
 
 		 215 aa  115  5e-25  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  34.6 
 
 		 209 aa  115  6.9999999999999995e-25  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  34.6 
 
 		 219 aa  115  6.9999999999999995e-25  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.0121621 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  30.52 
 
 		 227 aa  114  7.999999999999999e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  32.7 
 
 		 216 aa  114  1.0000000000000001e-24  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  32.2 
 
 		 214 aa  114  1.0000000000000001e-24  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  33.67 
 
 		 213 aa  114  1.0000000000000001e-24  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.16 
 
 		 217 aa  114  1.0000000000000001e-24  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  32.66 
 
 		 228 aa  114  1.0000000000000001e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  32.7 
 
 		 216 aa  113  2.0000000000000002e-24  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  29.9 
 
 		 215 aa  114  2.0000000000000002e-24  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  30.95 
 
 		 224 aa  113  2.0000000000000002e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  33.66 
 
 		 217 aa  113  2.0000000000000002e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  33.97 
 
 		 213 aa  113  2.0000000000000002e-24  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.226192 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  32.65 
 
 		 216 aa  113  2.0000000000000002e-24  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  33.18 
 
 		 220 aa  113  2.0000000000000002e-24  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  34.62 
 
 		 222 aa  113  2.0000000000000002e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  33.49 
 
 		 235 aa  114  2.0000000000000002e-24  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  32.84 
 
 		 215 aa  113  3e-24  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  31.25 
 
 		 213 aa  112  3e-24  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  31.19 
 
 		 222 aa  112  3e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal  1 
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  33.02 
 
 		 215 aa  112  3e-24  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.36 
 
 		 236 aa  112  3e-24  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013235  Namu_3409  two component transcriptional regulator, LuxR family  30.52 
 
 		 221 aa  112  4.0000000000000004e-24  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000306896  hitchhiker  0.000114505 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  29.41 
 
 		 215 aa  112  4.0000000000000004e-24  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  29.82 
 
 		 223 aa  112  4.0000000000000004e-24  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_013757  Gobs_4942  two component transcriptional regulator, LuxR family  31.31 
 
 		 222 aa  112  5e-24  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009997  Sbal195_2246  two component LuxR family transcriptional regulator  32.69 
 
 		 214 aa  112  5e-24  Shewanella baltica OS195  Bacteria  normal  0.0703025  hitchhiker  0.00413313 
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  29.25 
 
 		 232 aa  112  6e-24  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  35.15 
 
 		 218 aa  112  6e-24  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_008010  Dgeo_2486  two component LuxR family transcriptional regulator  35.23 
 
 		 208 aa  112  6e-24  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  33.33 
 
 		 208 aa  111  6e-24  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  29.72 
 
 		 232 aa  112  6e-24  Dehalococcoides sp. BAV1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  32.7 
 
 		 223 aa  111  7.000000000000001e-24  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_013159  Svir_04820  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  31.56 
 
 		 229 aa  111  7.000000000000001e-24  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.465009  normal  1 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  33.49 
 
 		 219 aa  111  7.000000000000001e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_007404  Tbd_2237  two component LuxR family transcriptional regulator  34.13 
 
 		 211 aa  111  8.000000000000001e-24  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  29.67 
 
 		 230 aa  111  8.000000000000001e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012912  Dd1591_3504  DNA-binding transcriptional activator UhpA  35.18 
 
 		 196 aa  111  8.000000000000001e-24  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  32.23 
 
 		 207 aa  111  9e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  32.23 
 
 		 207 aa  111  9e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  33.97 
 
 		 215 aa  111  9e-24  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal  1 
 
 
-
 
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