Gene VC0395_0622 details

Gene Information

• Locus tag: VC0395_0622
• Symbol: uhpA
• ID: 5134553
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009456
• Strand: +
• Start bp: 678306
• End bp: 678932
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640530944
• Product: transcriptional regulator UhpA
• Protein accession: YP_001215461
• Protein GI: 147671836
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 49
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTACCA TCGCGCTGGT GGATGACCAC ACGATTGTAC GTTCAGGCTT CGCTCAGCTA 
CTCAATCTTG AGCAAGATAT TAGGGTGCAA GGAGAGTACG AAAGTGCAAA AGCGGCCTTT 
CATGCCCTCA CCCAAGCGGA AGTCGATGTC GCTATCATCG ATATTTCAAT GCCGGATGAA 
AATGGACTGA GTCTGCTTGA GCGCCTGCGC CAACATAACC CGCGTTTCAA AGCGATCATC 
CTCAGTATTT ATGACTCGGC TTCATTTGTG AAAAAAGCCT TGGATGCAGG AGCACAAGGT 
TATCTTTCAA AACGTTGTGG CCCAAGCGAG CTAGTGAGTG CGATTCGTAC CGTTGCCTCT 
GGCAGACGCT ATTTGTGCGC CGATGCCTTG GTCAATTTGA GTAATCCCGA TATCAATAAT 
GTGCTTGCCG ACCTTACCAA GCGTGAAGTT GAAGTGTTTG ATTTATTGGT ACAAGGCAAA 
GAGGTGAAAG AGATCGCGCA AACGCTGTTT CTCAGCCATA AAACCGTTCA CGTTCACCGA 
GCCAACATTT TGAGCAAATT AAACCTAACC AATAACGTGG ATGTGATCCG CTTTGCTTTG 
CAGCACCACC TGCTCGTGGA AGGTTAA 

 

Protein sequence

MITIALVDDH TIVRSGFAQL LNLEQDIRVQ GEYESAKAAF HALTQAEVDV AIIDISMPDE 
NGLSLLERLR QHNPRFKAII LSIYDSASFV KKALDAGAQG YLSKRCGPSE LVSAIRTVAS 
GRRYLCADAL VNLSNPDINN VLADLTKREV EVFDLLVQGK EVKEIAQTLF LSHKTVHVHR 
ANILSKLNLT NNVDVIRFAL QHHLLVEG