More than 300 homologs were found in PanDaTox collection
for query gene Cpin_2137 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_2137  two component transcriptional regulator, LuxR family  100 
 
 
211 aa  421  1e-117  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0335187  normal 
 
 
-
 
NC_013132  Cpin_4278  two component transcriptional regulator, LuxR family  51.22 
 
 
213 aa  214  9.999999999999999e-55  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0894003 
 
 
-
 
NC_013037  Dfer_1698  two component transcriptional regulator, LuxR family  46.53 
 
 
207 aa  187  1e-46  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.126193 
 
 
-
 
NC_009441  Fjoh_0559  two component LuxR family transcriptional regulator  42.79 
 
 
211 aa  181  7e-45  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0841173  n/a   
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  44.12 
 
 
207 aa  179  2.9999999999999997e-44  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  43.07 
 
 
206 aa  168  6e-41  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  44.83 
 
 
208 aa  165  4e-40  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  45.27 
 
 
205 aa  164  8e-40  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.438194 
 
 
-
 
NC_013132  Cpin_1440  two component transcriptional regulator, LuxR family  41.18 
 
 
208 aa  159  2e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  37.75 
 
 
214 aa  143  2e-33  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  40 
 
 
213 aa  140  1.9999999999999998e-32  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  37.5 
 
 
216 aa  137  2e-31  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  32.42 
 
 
220 aa  134  9.999999999999999e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_009441  Fjoh_1987  two component LuxR family transcriptional regulator  38.46 
 
 
213 aa  133  1.9999999999999998e-30  Flavobacterium johnsoniae UW101  Bacteria  normal  0.429674  n/a   
 
 
-
 
NC_013730  Slin_6527  two component transcriptional regulator, LuxR family  38.28 
 
 
215 aa  133  1.9999999999999998e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  34.76 
 
 
216 aa  132  5e-30  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  36.27 
 
 
215 aa  131  7.999999999999999e-30  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  35.82 
 
 
213 aa  129  4.0000000000000003e-29  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  35.82 
 
 
213 aa  129  4.0000000000000003e-29  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_013456  VEA_003136  transcriptional regulator LuxR family protein  34.45 
 
 
212 aa  128  5.0000000000000004e-29  Vibrio sp. Ex25  Bacteria  normal  0.12843  n/a   
 
 
-
 
NC_002939  GSU0682  LuxR family DNA-binding response regulator  36.41 
 
 
215 aa  127  1.0000000000000001e-28  Geobacter sulfurreducens PCA  Bacteria  normal  0.874366  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  35.92 
 
 
213 aa  127  1.0000000000000001e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  37.2 
 
 
207 aa  127  2.0000000000000002e-28  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  35.78 
 
 
210 aa  125  4.0000000000000003e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  37.56 
 
 
214 aa  125  5e-28  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_010571  Oter_1551  two component LuxR family transcriptional regulator  35.15 
 
 
229 aa  124  7e-28  Opitutus terrae PB90-1  Bacteria  normal  normal  0.460798 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  38.24 
 
 
208 aa  125  7e-28  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  35.82 
 
 
206 aa  124  8.000000000000001e-28  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  37.17 
 
 
209 aa  124  1e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  37.17 
 
 
209 aa  124  1e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  37.17 
 
 
209 aa  124  1e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  37.17 
 
 
209 aa  124  1e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  37.17 
 
 
209 aa  124  1e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_013132  Cpin_1732  two component transcriptional regulator, LuxR family  39.9 
 
 
211 aa  124  1e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  35.89 
 
 
215 aa  123  2e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008255  CHU_1266  two-component response regulator  33.95 
 
 
227 aa  123  2e-27  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.847879  normal  0.913346 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  122  3e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_013061  Phep_2735  response regulator receiver  36.28 
 
 
224 aa  123  3e-27  Pedobacter heparinus DSM 2366  Bacteria  normal  0.0572845  normal 
 
 
-
 
NC_009565  TBFG_10861  nitrate/nitrite response transcriptional regulatory protein narL  33.66 
 
 
216 aa  122  3e-27  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000061441 
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  35.1 
 
 
210 aa  122  3e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  122  3e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  34.1 
 
 
218 aa  122  3e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_2966  two component LuxR family transcriptional regulator  35.41 
 
 
218 aa  122  4e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.288922 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  122  4e-27  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_008390  Bamb_3100  two component LuxR family transcriptional regulator  35.78 
 
 
218 aa  122  4e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.650822  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  35.02 
 
 
218 aa  122  5e-27  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  33.33 
 
 
216 aa  122  5e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  122  6e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  34.72 
 
 
216 aa  121  6e-27  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  122  6e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_013730  Slin_0700  two component transcriptional regulator, LuxR family  34.1 
 
 
218 aa  121  7e-27  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00980919  normal  0.316207 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  33.5 
 
 
220 aa  121  7e-27  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  33.66 
 
 
215 aa  121  8e-27  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  32.52 
 
 
216 aa  121  8e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  33.82 
 
 
215 aa  121  8e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  32.23 
 
 
232 aa  120  9.999999999999999e-27  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  33.33 
 
 
215 aa  120  9.999999999999999e-27  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  36.23 
 
 
207 aa  120  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  34.6 
 
 
223 aa  120  9.999999999999999e-27  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  36.23 
 
 
207 aa  120  9.999999999999999e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  33.33 
 
 
215 aa  120  9.999999999999999e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  33.64 
 
 
218 aa  120  1.9999999999999998e-26  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5409  two component transcriptional regulator, LuxR family  32.41 
 
 
223 aa  120  1.9999999999999998e-26  Spirosoma linguale DSM 74  Bacteria  hitchhiker  0.00220575  normal 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  31.86 
 
 
215 aa  120  1.9999999999999998e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  32.85 
 
 
213 aa  120  1.9999999999999998e-26  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_007492  Pfl01_3957  two component LuxR family transcriptional regulator  33.64 
 
 
219 aa  120  1.9999999999999998e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  34.72 
 
 
216 aa  120  1.9999999999999998e-26  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  35.16 
 
 
221 aa  120  1.9999999999999998e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  31.75 
 
 
232 aa  120  1.9999999999999998e-26  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2087  two component LuxR family transcriptional regulator  36.79 
 
 
213 aa  119  1.9999999999999998e-26  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0358431  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  33.64 
 
 
218 aa  120  1.9999999999999998e-26  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  37.31 
 
 
211 aa  119  3e-26  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  35.12 
 
 
211 aa  119  3e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  32.84 
 
 
218 aa  119  3e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  38.05 
 
 
214 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0560765 
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  34.98 
 
 
209 aa  119  3.9999999999999996e-26  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  38.05 
 
 
214 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  38.05 
 
 
214 aa  119  3.9999999999999996e-26  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00685344 
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  34.65 
 
 
208 aa  119  3.9999999999999996e-26  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  37.32 
 
 
213 aa  119  3.9999999999999996e-26  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  33.5 
 
 
235 aa  119  4.9999999999999996e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  32.84 
 
 
215 aa  118  4.9999999999999996e-26  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_010622  Bphy_0097  two component LuxR family transcriptional regulator  33.33 
 
 
218 aa  118  4.9999999999999996e-26  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  32.84 
 
 
215 aa  119  4.9999999999999996e-26  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  36.23 
 
 
217 aa  119  4.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_3052  two component LuxR family transcriptional regulator  34.8 
 
 
218 aa  118  4.9999999999999996e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317078  normal 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  38.05 
 
 
214 aa  118  4.9999999999999996e-26  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  37.31 
 
 
213 aa  118  6e-26  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  34.12 
 
 
219 aa  118  6e-26  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_007651  BTH_I0209  LuxR family DNA-binding response regulator  34.8 
 
 
218 aa  118  7e-26  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  35.08 
 
 
209 aa  118  7e-26  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  37.31 
 
 
213 aa  118  7e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_2237  two component LuxR family transcriptional regulator  34.47 
 
 
211 aa  118  7.999999999999999e-26  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  38.24 
 
 
214 aa  118  7.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5915  two component transcriptional regulator, LuxR family  34.95 
 
 
207 aa  117  9e-26  Chitinophaga pinensis DSM 2588  Bacteria  hitchhiker  0.00974735  normal 
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  32.35 
 
 
215 aa  117  9.999999999999999e-26  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  32.35 
 
 
215 aa  117  9.999999999999999e-26  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  33.65 
 
 
210 aa  117  9.999999999999999e-26  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0301144 
 
 
-
 
NC_010159  YpAngola_A2052  response regulator  31.4 
 
 
218 aa  117  9.999999999999999e-26  Yersinia pestis Angola  Bacteria  hitchhiker  0.0000052182  hitchhiker  0.00148564 
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  32.35 
 
 
215 aa  117  9.999999999999999e-26  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
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