More than 300 homologs were found in PanDaTox collection
for query gene Namu_3409 on replicon NC_013235
Organism: Nakamurella multipartita DSM 44233



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013235  Namu_3409  two component transcriptional regulator, LuxR family  100 
 
 
221 aa  431  1e-120  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000306896  hitchhiker  0.000114505 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  57.01 
 
 
213 aa  227  1e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  54.84 
 
 
220 aa  214  8e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  50.23 
 
 
227 aa  214  9e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_009921  Franean1_1435  two component LuxR family transcriptional regulator  53.36 
 
 
218 aa  212  3.9999999999999995e-54  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3835  two component LuxR family transcriptional regulator  53.42 
 
 
217 aa  204  1e-51  Frankia sp. EAN1pec  Bacteria  normal  0.760782  normal  0.0940778 
 
 
-
 
NC_013595  Sros_1446  response regulator receiver protein  50.7 
 
 
209 aa  183  2.0000000000000003e-45  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0167897  normal  0.0778626 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  51.01 
 
 
218 aa  182  3e-45  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_3326  two component transcriptional regulator, LuxR family  48.44 
 
 
223 aa  172  2.9999999999999996e-42  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  40.09 
 
 
216 aa  169  3e-41  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4897  response regulator receiver  44.75 
 
 
214 aa  165  5e-40  Nocardioides sp. JS614  Bacteria  normal  0.275297  normal  0.216824 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  43.06 
 
 
219 aa  163  2.0000000000000002e-39  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  39.81 
 
 
217 aa  162  3e-39  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  42.59 
 
 
253 aa  160  2e-38  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  37.44 
 
 
228 aa  160  2e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  45.07 
 
 
217 aa  156  3e-37  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  41.59 
 
 
237 aa  155  3e-37  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_012669  Bcav_4158  two component transcriptional regulator, LuxR family  48.13 
 
 
216 aa  155  4e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.962754  normal 
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  41.12 
 
 
237 aa  155  5.0000000000000005e-37  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  41.59 
 
 
216 aa  155  5.0000000000000005e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  43.52 
 
 
218 aa  155  5.0000000000000005e-37  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  41.1 
 
 
250 aa  154  7e-37  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  39.07 
 
 
209 aa  153  2e-36  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  42.99 
 
 
216 aa  153  2e-36  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  37.86 
 
 
231 aa  151  8e-36  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_21850  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.36 
 
 
222 aa  150  1e-35  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118113  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  40.28 
 
 
234 aa  150  2e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  39.81 
 
 
224 aa  149  3e-35  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  37.67 
 
 
211 aa  149  4e-35  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  43.81 
 
 
224 aa  149  4e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3249  two component transcriptional regulator, LuxR family  41.75 
 
 
211 aa  149  4e-35  Cyanothece sp. PCC 7425  Bacteria  normal  0.414819  normal  0.558116 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  39.91 
 
 
238 aa  148  5e-35  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  39.25 
 
 
303 aa  149  5e-35  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  38.67 
 
 
261 aa  148  7e-35  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  38.81 
 
 
222 aa  148  7e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  37.97 
 
 
242 aa  147  8e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  43.95 
 
 
221 aa  147  1.0000000000000001e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  38.43 
 
 
236 aa  147  1.0000000000000001e-34  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  39.07 
 
 
218 aa  147  1.0000000000000001e-34  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  38.46 
 
 
220 aa  146  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  37.55 
 
 
242 aa  146  2.0000000000000003e-34  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  38.36 
 
 
220 aa  146  2.0000000000000003e-34  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  37.27 
 
 
220 aa  146  3e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  40 
 
 
234 aa  145  4.0000000000000006e-34  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  41.63 
 
 
214 aa  145  4.0000000000000006e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.56 
 
 
227 aa  145  7.0000000000000006e-34  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_013947  Snas_0541  two component transcriptional regulator, LuxR family  38.16 
 
 
221 aa  145  7.0000000000000006e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  41.07 
 
 
226 aa  144  7.0000000000000006e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  40.85 
 
 
210 aa  144  9e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  37.78 
 
 
241 aa  144  9e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  39.35 
 
 
222 aa  144  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  39.38 
 
 
234 aa  144  1e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  42.04 
 
 
226 aa  144  2e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  40.09 
 
 
207 aa  143  2e-33  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  40.74 
 
 
224 aa  143  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  37.61 
 
 
224 aa  143  2e-33  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  40.95 
 
 
217 aa  143  2e-33  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  42.6 
 
 
225 aa  143  2e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  43.18 
 
 
221 aa  143  2e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  43.69 
 
 
222 aa  143  2e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  41.4 
 
 
215 aa  143  2e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  39.74 
 
 
228 aa  142  3e-33  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  39.64 
 
 
228 aa  143  3e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  38.01 
 
 
226 aa  142  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  40.45 
 
 
216 aa  142  4e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  39.44 
 
 
214 aa  142  4e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  40 
 
 
221 aa  142  4e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  36.71 
 
 
218 aa  142  4e-33  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  38.86 
 
 
231 aa  142  4e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  39.82 
 
 
225 aa  142  5e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  38.18 
 
 
225 aa  142  5e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  38.18 
 
 
241 aa  142  5e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  37.9 
 
 
224 aa  142  5e-33  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  35.59 
 
 
225 aa  142  6e-33  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  40.27 
 
 
229 aa  142  6e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4115  response regulator receiver protein  44.91 
 
 
216 aa  142  6e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.071707  normal  0.0608108 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  42.45 
 
 
221 aa  141  6e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  41.44 
 
 
225 aa  141  7e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  41.96 
 
 
224 aa  141  8e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  40.48 
 
 
217 aa  141  9e-33  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  37.16 
 
 
224 aa  140  9.999999999999999e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  37.16 
 
 
224 aa  140  9.999999999999999e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  41.86 
 
 
214 aa  141  9.999999999999999e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_013132  Cpin_2907  two component transcriptional regulator, LuxR family  34.72 
 
 
222 aa  140  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0590247  normal 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  40.28 
 
 
218 aa  140  9.999999999999999e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  41.82 
 
 
218 aa  141  9.999999999999999e-33  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  38.46 
 
 
213 aa  140  9.999999999999999e-33  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009483  Gura_0759  two component LuxR family transcriptional regulator  40.74 
 
 
217 aa  140  9.999999999999999e-33  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  37.79 
 
 
223 aa  140  9.999999999999999e-33  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  40.89 
 
 
231 aa  140  1.9999999999999998e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  40.97 
 
 
227 aa  140  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  36.24 
 
 
222 aa  140  1.9999999999999998e-32  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  41.82 
 
 
219 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_009523  RoseRS_1633  two component LuxR family transcriptional regulator  37 
 
 
254 aa  139  1.9999999999999998e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  40.81 
 
 
225 aa  140  1.9999999999999998e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  40.64 
 
 
230 aa  140  1.9999999999999998e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  38.25 
 
 
222 aa  140  1.9999999999999998e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  40 
 
 
218 aa  139  1.9999999999999998e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  40.18 
 
 
220 aa  139  3e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  38.39 
 
 
223 aa  139  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
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