Gene Daci_5322 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_5322 
Symbol 
ID5750934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp5902776 
End bp5903438 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content71% 
IMG OID641300447 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001566336 
Protein GI160900754 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.929677 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCCCA TGATCCGCAT CCTCCTGGTG GACGACCACC CTCTCGTGCG CGACGGCGTG 
TCCATGCGCC TGCAGGCCAC GGACCATATC CGTGTGGTGG GCGAGGCCGC CAGCGTGGAC
CAGGCCCTGC CGCTGGCCCG CCAGCTGTCG CCCGACCTGG TGGTCACCGA CATCCGCATG
CCGGGCGCCA GCGGCATCGA CCTGGCCGCG CTGTTCCGCG ATCAGTTCCC CCTGGTGCGC
GTGCTGGTGC TGTCCATGCA TGAGGATCCC GAATACGTGC GCCGCGCCGT GGCGCTGGGC
GCGCGCGGCT ATGTGCTCAA GGACGCGCCT GCGCAGCAGC TCATCGAGGC CATAGACCGG
GTCTACGCCG GCGGCCTGTA TTTCAGCCCC GGCCTGCAGC CCGTGGCCGA AGAAGACGGC
AGCGCGTCCG GGCCCCGGCG CGCCCTCACG CCGCGCGAGG CCAGCGTGCT GCAGTGGATC
TCGGAGGGCC GCTCCAACAA GGAAATCGCC GCGCTCATGG GCACCTCGGT GCGCACCGTG
GAAACCCACC GCCTGCACCT GCGCCGCAAG CTGCGCATCG ACGGCCATGC GGCCTTCATC
AAGTACGCGG TGGATTACGC CGACCTGCTG GGGCCGGCAC CCCAGGAGGC CCGCGCAGGC
TAG
 
Protein sequence
MNPMIRILLV DDHPLVRDGV SMRLQATDHI RVVGEAASVD QALPLARQLS PDLVVTDIRM 
PGASGIDLAA LFRDQFPLVR VLVLSMHEDP EYVRRAVALG ARGYVLKDAP AQQLIEAIDR
VYAGGLYFSP GLQPVAEEDG SASGPRRALT PREASVLQWI SEGRSNKEIA ALMGTSVRTV
ETHRLHLRRK LRIDGHAAFI KYAVDYADLL GPAPQEARAG