227 homologs were found in PanDaTox collection
for query gene CPS_4374 on replicon NC_003910
Organism: Colwellia psychrerythraea 34H



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003910  CPS_4374  ribonuclease activity regulator protein RraA  100 
 
 
165 aa  332  2e-90  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3549  ribonuclease activity regulator protein RraA  65.62 
 
 
161 aa  219  9.999999999999999e-57  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00109264  normal 
 
 
-
 
NC_008322  Shewmr7_0407  ribonuclease activity regulator protein RraA  65.62 
 
 
161 aa  219  9.999999999999999e-57  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000143495  normal 
 
 
-
 
NC_008577  Shewana3_3723  ribonuclease activity regulator protein RraA  65.62 
 
 
161 aa  219  9.999999999999999e-57  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00679648  normal 
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  65 
 
 
161 aa  216  8.999999999999998e-56  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  216  1e-55  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  65 
 
 
161 aa  216  1e-55  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  216  1e-55  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  216  1e-55  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  216  1e-55  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  215  2e-55  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4094  ribonuclease activity regulator protein RraA  63.75 
 
 
161 aa  215  2.9999999999999998e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3370  ribonuclease activity regulator protein RraA  64.38 
 
 
161 aa  213  8e-55  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3200  ribonuclease activity regulator protein RraA  63.75 
 
 
161 aa  213  9e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0530  ribonuclease activity regulator protein RraA  63.12 
 
 
161 aa  213  9.999999999999999e-55  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_4070  ribonuclease activity regulator protein RraA  58.75 
 
 
161 aa  211  3.9999999999999995e-54  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  63.12 
 
 
161 aa  211  4.9999999999999996e-54  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  63.12 
 
 
161 aa  211  4.9999999999999996e-54  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  62.5 
 
 
175 aa  209  1e-53  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  60 
 
 
166 aa  209  1e-53  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_011138  MADE_00210  ribonuclease activity regulator protein RraA  60 
 
 
161 aa  209  2e-53  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  61.25 
 
 
169 aa  206  9e-53  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_008709  Ping_3296  ribonuclease activity regulator protein RraA  62.03 
 
 
170 aa  206  1e-52  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.234724 
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  60.76 
 
 
171 aa  203  7e-52  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  58.44 
 
 
165 aa  203  1e-51  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  58.75 
 
 
161 aa  202  2e-51  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009436  Ent638_4044  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  199  1.9999999999999998e-50  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03814  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4161  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03763  hypothetical protein  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_010498  EcSMS35_4371  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3.9999999999999996e-50  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.520292 
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  5e-50  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4421  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  5e-50  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4335  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  5e-50  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0948467  n/a   
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  5e-50  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  5e-50  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  58.13 
 
 
161 aa  197  7.999999999999999e-50  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  196  1.0000000000000001e-49  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  196  1.0000000000000001e-49  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  196  1.0000000000000001e-49  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  196  1.0000000000000001e-49  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0111  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  183  9e-46  Dickeya zeae Ech1591  Bacteria  normal  0.530064  n/a   
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  51.85 
 
 
162 aa  183  9e-46  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  51.23 
 
 
162 aa  182  3e-45  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  50.93 
 
 
163 aa  180  7e-45  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  51.55 
 
 
163 aa  180  7e-45  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  50.93 
 
 
163 aa  179  1e-44  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  50.62 
 
 
162 aa  178  4e-44  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  50.62 
 
 
162 aa  176  1e-43  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_012880  Dd703_3800  ribonuclease activity regulator protein RraA  55.62 
 
 
161 aa  175  2e-43  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  50.93 
 
 
163 aa  175  3e-43  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  50 
 
 
162 aa  174  4e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  50.62 
 
 
162 aa  173  9.999999999999999e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  49.07 
 
 
163 aa  171  2.9999999999999996e-42  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  46.3 
 
 
163 aa  148  4e-35  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  46.1 
 
 
161 aa  146  1.0000000000000001e-34  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  44.81 
 
 
159 aa  146  1.0000000000000001e-34  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1888  ribonuclease activity regulator protein RraA  46.75 
 
 
164 aa  146  2.0000000000000003e-34  Shewanella amazonensis SB2B  Bacteria  normal  0.059217  normal 
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  43.67 
 
 
159 aa  144  4.0000000000000006e-34  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  46.15 
 
 
163 aa  142  2e-33  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  40 
 
 
166 aa  140  7e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  41.77 
 
 
161 aa  138  3e-32  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_013159  Svir_20270  RraA family protein  47.02 
 
 
155 aa  136  1e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  44.52 
 
 
165 aa  134  5e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  39.87 
 
 
159 aa  134  6.0000000000000005e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2373  ribonuclease activity regulator protein RraA  44.23 
 
 
164 aa  132  1.9999999999999998e-30  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00367036  normal  0.0338555 
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  39.1 
 
 
160 aa  132  1.9999999999999998e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  43.59 
 
 
164 aa  131  3.9999999999999996e-30  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_009092  Shew_2117  ribonuclease activity regulator protein RraA  41.36 
 
 
164 aa  131  3.9999999999999996e-30  Shewanella loihica PV-4  Bacteria  normal  0.86066  normal 
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  43.59 
 
 
164 aa  131  5e-30  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
NC_008321  Shewmr4_2165  ribonuclease activity regulator protein RraA  43.23 
 
 
164 aa  130  7.999999999999999e-30  Shewanella sp. MR-4  Bacteria  normal  0.0632667  normal  0.880589 
 
 
-
 
NC_008322  Shewmr7_2242  ribonuclease activity regulator protein RraA  43.23 
 
 
164 aa  130  7.999999999999999e-30  Shewanella sp. MR-7  Bacteria  normal  0.132469  normal  0.489263 
 
 
-
 
NC_002977  MCA1813  ribonuclease activity regulator protein RraA  43.75 
 
 
161 aa  129  1.0000000000000001e-29  Methylococcus capsulatus str. Bath  Bacteria  normal  0.208296  n/a   
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  38.22 
 
 
162 aa  129  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2025  ribonuclease activity regulator protein RraA  42.76 
 
 
177 aa  129  1.0000000000000001e-29  Shewanella denitrificans OS217  Bacteria  normal  0.111815  n/a   
 
 
-
 
NC_009438  Sputcn32_1772  ribonuclease activity regulator protein RraA  43.87 
 
 
164 aa  130  1.0000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.0420602  n/a   
 
 
-
 
NC_008345  Sfri_2210  ribonuclease activity regulator protein RraA  41.94 
 
 
164 aa  129  2.0000000000000002e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1992  ribonuclease activity regulator protein RraA  42.95 
 
 
164 aa  127  6e-29  Shewanella baltica OS155  Bacteria  normal  0.816132  n/a   
 
 
-
 
NC_011312  VSAL_I2557  ribonuclease activity regulator protein RraA  38.16 
 
 
158 aa  127  7.000000000000001e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  38.61 
 
 
159 aa  127  7.000000000000001e-29  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_010524  Lcho_2009  ribonuclease activity regulator protein RraA  42.48 
 
 
167 aa  127  7.000000000000001e-29  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00664884 
 
 
-
 
NC_011992  Dtpsy_1445  ribonuclease activity regulator protein RraA  42.14 
 
 
168 aa  126  1.0000000000000001e-28  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  37.58 
 
 
162 aa  126  1.0000000000000001e-28  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_011663  Sbal223_2332  ribonuclease activity regulator protein RraA  42.95 
 
 
164 aa  126  2.0000000000000002e-28  Shewanella baltica OS223  Bacteria  hitchhiker  0.00982975  hitchhiker  0.00847233 
 
 
-
 
NC_009524  PsycPRwf_1638  ribonuclease activity regulator protein RraA  48.94 
 
 
175 aa  126  2.0000000000000002e-28  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.000156979  normal  0.0371486 
 
 
-
 
NC_007969  Pcryo_1665  ribonuclease activity regulator protein RraA  46.81 
 
 
177 aa  125  2.0000000000000002e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0814823 
 
 
-
 
NC_008782  Ajs_2403  ribonuclease activity regulator protein RraA  42.14 
 
 
168 aa  125  2.0000000000000002e-28  Acidovorax sp. JS42  Bacteria  normal  0.330498  normal 
 
 
-
 
NC_009831  Ssed_1984  ribonuclease activity regulator protein RraA  41.29 
 
 
164 aa  125  3e-28  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0137329  normal  0.331323 
 
 
-
 
NC_008825  Mpe_A1561  ribonuclease activity regulator protein RraA  39.62 
 
 
168 aa  125  3e-28  Methylibium petroleiphilum PM1  Bacteria  normal  0.220477  normal 
 
 
-
 
NC_013456  VEA_004459  ribonuclease E inhibitor RraA  35.26 
 
 
160 aa  125  3e-28  Vibrio sp. Ex25  Bacteria  normal  0.0150677  n/a   
 
 
-
 
NC_004347  SO_2567  ribonuclease activity regulator protein RraA  40.65 
 
 
164 aa  125  4.0000000000000003e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008781  Pnap_2372  ribonuclease activity regulator protein RraA  40 
 
 
170 aa  124  7e-28  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.693976  normal 
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  41.1 
 
 
165 aa  123  1e-27  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1955  ribonuclease activity regulator protein RraA  39.63 
 
 
173 aa  123  1e-27  Rhodoferax ferrireducens T118  Bacteria  normal  0.30554  n/a   
 
 
-
 
NC_007973  Rmet_1382  ribonuclease activity regulator protein RraA  38.41 
 
 
170 aa  123  1e-27  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.521864 
 
 
-
 
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