Gene Lcho_2009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_2009 
Symbol 
ID6160760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand- 
Start bp2179016 
End bp2179519 
Gene Length504 bp 
Protein Length167 aa 
Translation table11 
GC content73% 
IMG OID641664778 
Productribonuclease activity regulator protein RraA 
Protein accessionYP_001791041 
Protein GI171058692 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID[TIGR01935] RraA famliy 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.00664884 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTCCG CCATCTCGTC CCCAGCCACC TGCGACCTCT GCGATGCCCA CAAGAACGAC 
AGCGACGGTG ACTTCCGCGT GCTGCCGCCG GTGTTCCGAG ACTTCGGCGC GCGCAGCGCC 
TTCAGCGGCC GGGTGGTGAC GGTCAAGTGC CACGAGGACA ACAGCCACTT CAAGGCCGCC 
GTCGAGTCGC CGGGCCTGGG CCGCGTGCTG GTGGTCGACG GCGGCGGCTC GCTGCGCCGC 
GCCCTGCTCG GTGGCAACCT GGGCGCCGCC GCGGCGCGCA ACGGCTGGGC CGGCCTGGTG 
ATCGACGGCT GCGTGCGCGA TGTCGCCGAG CTGGCGGTCA GCGAGGTCGG CATCCGCGCG 
CTGGCTGCGA TGCCGCTGCC GACCGACCGG CGAGGCGTCG GCCAGACCGA CGTCGCCGTG 
CAGATCCAGG GCGTCTGGGT GCGCCCGGGC GACTGGCTGG CCGCCGACGC CGACGGCATC 
GTCGTCATGA GCCAGCCCGA CTGA
 
Protein sequence
MNSAISSPAT CDLCDAHKND SDGDFRVLPP VFRDFGARSA FSGRVVTVKC HEDNSHFKAA 
VESPGLGRVL VVDGGGSLRR ALLGGNLGAA AARNGWAGLV IDGCVRDVAE LAVSEVGIRA 
LAAMPLPTDR RGVGQTDVAV QIQGVWVRPG DWLAADADGI VVMSQPD