More than 300 homologs were found in PanDaTox collection
for query gene Lcho_2009 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2009  ribonuclease activity regulator protein RraA  100 
 
 
167 aa  331  3e-90  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00664884 
 
 
-
 
NC_008781  Pnap_2372  ribonuclease activity regulator protein RraA  75.15 
 
 
170 aa  247  4e-65  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.693976  normal 
 
 
-
 
NC_007908  Rfer_1955  ribonuclease activity regulator protein RraA  75 
 
 
173 aa  238  2e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.30554  n/a   
 
 
-
 
NC_008782  Ajs_2403  ribonuclease activity regulator protein RraA  73.46 
 
 
168 aa  236  1e-61  Acidovorax sp. JS42  Bacteria  normal  0.330498  normal 
 
 
-
 
NC_011992  Dtpsy_1445  ribonuclease activity regulator protein RraA  73.46 
 
 
168 aa  234  3e-61  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1561  ribonuclease activity regulator protein RraA  71.52 
 
 
168 aa  233  1.0000000000000001e-60  Methylibium petroleiphilum PM1  Bacteria  normal  0.220477  normal 
 
 
-
 
NC_007973  Rmet_1382  ribonuclease activity regulator protein RraA  55.56 
 
 
170 aa  180  6e-45  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.521864 
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  57.32 
 
 
165 aa  180  7e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  52.56 
 
 
162 aa  167  5e-41  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  56.77 
 
 
165 aa  167  8e-41  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  53.5 
 
 
163 aa  166  1e-40  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  52.87 
 
 
162 aa  166  1e-40  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  56.13 
 
 
165 aa  166  1e-40  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  53.5 
 
 
163 aa  166  2e-40  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  53.5 
 
 
163 aa  165  2e-40  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_010622  Bphy_1374  ribonuclease activity regulator protein RraA  53.46 
 
 
164 aa  164  4e-40  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000213066  normal 
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  53.5 
 
 
163 aa  164  4e-40  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  54.49 
 
 
161 aa  164  6.9999999999999995e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_009719  Plav_0585  regulator of ribonuclease activity A  53.12 
 
 
163 aa  163  1.0000000000000001e-39  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.444909  normal  0.73105 
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  51.92 
 
 
162 aa  162  1.0000000000000001e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  51.92 
 
 
162 aa  162  1.0000000000000001e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_012856  Rpic12D_1292  ribonuclease activity regulator protein RraA  52.56 
 
 
165 aa  162  2.0000000000000002e-39  Ralstonia pickettii 12D  Bacteria  normal  0.0683145  normal  0.12691 
 
 
-
 
NC_010682  Rpic_1229  ribonuclease activity regulator protein RraA  52.56 
 
 
165 aa  162  2.0000000000000002e-39  Ralstonia pickettii 12J  Bacteria  normal  0.698827  normal  0.761807 
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  53.55 
 
 
164 aa  160  6e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_010681  Bphyt_2492  ribonuclease activity regulator protein RraA  53.46 
 
 
164 aa  160  7e-39  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000420166  hitchhiker  0.0053907 
 
 
-
 
NC_007951  Bxe_A1645  ribonuclease activity regulator protein RraA  54.09 
 
 
164 aa  160  7e-39  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.002756  normal  0.0229312 
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  50.96 
 
 
162 aa  156  1e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  49.02 
 
 
162 aa  154  5.0000000000000005e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_003295  RSc1354  ribonuclease activity regulator protein RraA  51.55 
 
 
168 aa  153  1e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  0.498794  normal 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  48.41 
 
 
163 aa  152  1e-36  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_013757  Gobs_3615  regulator of ribonuclease activity A  54.14 
 
 
164 aa  153  1e-36  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.507491  n/a   
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  52.73 
 
 
163 aa  152  2.9999999999999998e-36  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  46.41 
 
 
165 aa  148  4e-35  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  45.68 
 
 
159 aa  148  4e-35  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  43.31 
 
 
175 aa  145  4.0000000000000006e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  48.41 
 
 
159 aa  145  4.0000000000000006e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  42.68 
 
 
169 aa  143  9e-34  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_008700  Sama_1888  ribonuclease activity regulator protein RraA  52.67 
 
 
164 aa  143  1e-33  Shewanella amazonensis SB2B  Bacteria  normal  0.059217  normal 
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  45.1 
 
 
163 aa  142  2e-33  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  42.04 
 
 
171 aa  142  2e-33  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  49.67 
 
 
164 aa  141  4e-33  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
NC_009052  Sbal_1992  ribonuclease activity regulator protein RraA  49.67 
 
 
164 aa  141  4e-33  Shewanella baltica OS155  Bacteria  normal  0.816132  n/a   
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  49.67 
 
 
164 aa  141  5e-33  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  49.37 
 
 
166 aa  140  6e-33  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  49.38 
 
 
163 aa  140  6e-33  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  44.52 
 
 
161 aa  140  6e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  140  7e-33  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0386  ribonuclease activity regulator protein RraA  49.35 
 
 
167 aa  140  7e-33  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  40.76 
 
 
166 aa  140  7e-33  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  140  7e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  140  7e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  43.95 
 
 
159 aa  139  1.9999999999999998e-32  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_009357  OSTLU_8571  predicted protein  50 
 
 
136 aa  137  4.999999999999999e-32  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal  0.0694704 
 
 
-
 
NC_011663  Sbal223_2332  ribonuclease activity regulator protein RraA  51.45 
 
 
164 aa  137  6e-32  Shewanella baltica OS223  Bacteria  hitchhiker  0.00982975  hitchhiker  0.00847233 
 
 
-
 
NC_011149  SeAg_B4335  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  7e-32  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0948467  n/a   
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  7e-32  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  7e-32  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4421  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  7e-32  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_2373  ribonuclease activity regulator protein RraA  49.01 
 
 
164 aa  137  7e-32  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00367036  normal  0.0338555 
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  7e-32  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2117  ribonuclease activity regulator protein RraA  48.05 
 
 
164 aa  137  7e-32  Shewanella loihica PV-4  Bacteria  normal  0.86066  normal 
 
 
-
 
CP001509  ECD_03814  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4371  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.520292 
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4161  ribonuclease activity regulator protein RraA  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03763  hypothetical protein  45.22 
 
 
161 aa  137  8.999999999999999e-32  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  42.68 
 
 
161 aa  136  1e-31  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  43.83 
 
 
161 aa  136  1e-31  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  41.4 
 
 
161 aa  135  2e-31  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_009436  Ent638_4044  ribonuclease activity regulator protein RraA  43.31 
 
 
161 aa  135  3.0000000000000003e-31  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2165  ribonuclease activity regulator protein RraA  46.75 
 
 
164 aa  135  3.0000000000000003e-31  Shewanella sp. MR-4  Bacteria  normal  0.0632667  normal  0.880589 
 
 
-
 
NC_008322  Shewmr7_2242  ribonuclease activity regulator protein RraA  46.75 
 
 
164 aa  135  3.0000000000000003e-31  Shewanella sp. MR-7  Bacteria  normal  0.132469  normal  0.489263 
 
 
-
 
NC_008345  Sfri_2210  ribonuclease activity regulator protein RraA  44.68 
 
 
164 aa  134  6.0000000000000005e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_20270  RraA family protein  49.68 
 
 
155 aa  132  1.9999999999999998e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  41.4 
 
 
161 aa  132  1.9999999999999998e-30  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  44.44 
 
 
162 aa  132  1.9999999999999998e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  45.86 
 
 
159 aa  132  1.9999999999999998e-30  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_008709  Ping_3296  ribonuclease activity regulator protein RraA  41.4 
 
 
170 aa  132  3e-30  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.234724 
 
 
-
 
NC_004347  SO_2567  ribonuclease activity regulator protein RraA  44.16 
 
 
164 aa  131  3.9999999999999996e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008228  Patl_4070  ribonuclease activity regulator protein RraA  42.68 
 
 
161 aa  131  5e-30  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  45.62 
 
 
162 aa  130  6e-30  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  44.22 
 
 
165 aa  130  6e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  41.4 
 
 
161 aa  130  7.999999999999999e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  42.04 
 
 
161 aa  130  1.0000000000000001e-29  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1772  ribonuclease activity regulator protein RraA  44.81 
 
 
164 aa  129  2.0000000000000002e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.0420602  n/a   
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  39.47 
 
 
160 aa  129  2.0000000000000002e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  40.76 
 
 
161 aa  129  3e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_1638  ribonuclease activity regulator protein RraA  40.96 
 
 
175 aa  129  3e-29  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.000156979  normal  0.0371486 
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  40.76 
 
 
161 aa  128  4.0000000000000003e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_2025  ribonuclease activity regulator protein RraA  39.51 
 
 
177 aa  128  4.0000000000000003e-29  Shewanella denitrificans OS217  Bacteria  normal  0.111815  n/a   
 
 
-
 
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