| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2092 |
|---|
| Symbol | |
|---|
| ID | 3367606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2441280 |
|---|
| End bp | 2441768 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637652441 |
|---|
| Product | ribonuclease activity regulator protein RraA |
|---|
| Protein accession | YP_235173 |
|---|
| Protein GI | 66045332 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
|---|
| TIGRFAM ID | [TIGR01935] RraA famliy |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.763155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00360273 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCATTACC TCACCCCCGA TCTGTGTGAC GCCTATCCGG ACCTGATTCA GGTCGTGGAG
CCGATGTTCA GCAATTTTGG CGGCCGCGAT TCGTTTGGTG GCCAGATCGT CACGCTGAAA
TGTTTCGAGG ACAACTCCAG GGTCAGGGAG CAGGTCGAGC TCGACGGCAA GGGCAAGGTG
CTGGTCGTCG ACGGCGGCGG TTCGCTGCGT TGCGCGCTAC TGGGTGACAT GCTGGCAGAC
AAGGCTGCAA AGAACGGCTG GGAAGGCATG TTGATCTACG GCTGCATCCG CGACGTGGAT
GTCATCGCCC AGACCGACCT GGGTGTCCAG GCGCTCGCCA GTCATCCGAA GAAAACCGAG
AAGCGCGGCA TAGGCGAGCT GAATGTGCCG GTGACCTTTG GCGGCGTGAC GTTCCGCCCG
GGTGAGTACC TGTACGCCGA CAACAATGGC GTCATCATTT CCCCATCAAC CCTGACCATG
CCGGAATAA
|
|---|
| Protein sequence | MHYLTPDLCD AYPDLIQVVE PMFSNFGGRD SFGGQIVTLK CFEDNSRVRE QVELDGKGKV
LVVDGGGSLR CALLGDMLAD KAAKNGWEGM LIYGCIRDVD VIAQTDLGVQ ALASHPKKTE
KRGIGELNVP VTFGGVTFRP GEYLYADNNG VIISPSTLTM PE
|
|---|
| |