Gene YPK_4106 details

Gene Information

• Locus tag: YPK_4106
• ID: 6088593
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 4538456
• End bp: 4538941
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641599205
• Product: ribonuclease activity regulator protein RraA
• Protein accession: YP_001722818
• Protein GI: 170026313
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0684] Demethylmenaquinone methyltransferase
• TIGRFAM ID: [TIGR01935] RraA famliy; [TIGR02998] regulator of ribonuclease activity A

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATATG ATACTTCCGA TCTCTGTGAC ATCTATCATG AAGAGGTAAA CGTGGTAGAA 
CCACTGTTCT CCAATTTTGG TGGGCGCACT TCATTTGGTG GCAAGATTAC TACCGTAAAA 
TGTTTCGAAG ATAACGGCTT GTTGTTTGAC CTGCTTGAAG AGAATGGTCT TGGCCGTGTC 
TTGGTCGTTG ATGGCGGTGG TTCAGTGCGC CGTGCATTAA TCAATGCTGA GCTAGCCGAA 
TTAGCCTTGA AAAACGAGTG GGAAGGCATT GTTGTTTACG GTGCCGTGCG TCAGGTCGAT 
GACTTGGCCG AGTTGGACAT TGGCATTCAG GCAATGGCCG CAATACCCGT CGGGGCTGCT 
GATGAGGGTG TGGGTGAGAG CGATATCCGT GTTAATTTTG GCGGTGTAAC GTTCTTCTCA 
GGTGACCATC TTTATGCCGA TAACACCGGT ATTATCTTAT CGGAAGATCC CCTGGATATT 
GAATAA 

 

Protein sequence

MKYDTSDLCD IYHEEVNVVE PLFSNFGGRT SFGGKITTVK CFEDNGLLFD LLEENGLGRV 
LVVDGGGSVR RALINAELAE LALKNEWEGI VVYGAVRQVD DLAELDIGIQ AMAAIPVGAA 
DEGVGESDIR VNFGGVTFFS GDHLYADNTG IILSEDPLDI E