| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2242 |
|---|
| Symbol | |
|---|
| ID | 4255167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2662508 |
|---|
| End bp | 2663002 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638122912 |
|---|
| Product | ribonuclease activity regulator protein RraA |
|---|
| Protein accession | YP_738287 |
|---|
| Protein GI | 114047737 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
|---|
| TIGRFAM ID | [TIGR01935] RraA famliy |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.132469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.489263 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATC TATTGCCTGA TTTGTTCGAT CACTATCCAT CAAAATTGAC GCTGTTACCG
CTCGATTTTC GTAGTTTTGG TGGTAAGCGT TTGTTTTGGG GTGAAGTTGT TACGGTTAAA
TGTTTTGAAG ATAACTCCAA AGTGAAAGAA GTGCTGGCCC AGCCTGGTCA TGGAAAAGTG
TTAGTCGTCG ATGGTGGTAG TTCGTCCCGT CGGGCGTTAT TGGGGGATTT GATTGCACAA
AGTGCCCTCG ATAACGGCTG GCAAGGCGTG GTGATTAATG GCTATGTCCG TGATGCGGCG
AGGCTTTCTA CTTTTAACCT CGGCGTTTAT GCCTTAGGGG CTATGCCGAT CAAGACCGAA
AAATTAAACC AAGGTCAAAT CGATGTGCCG ATTGAGTTTG GTACTGTCGT GATTAAACCC
GGCATGATGC TTTATGCCGA TGAGAATGGC ATTGCCGTTA GCGAGGAGTC ATTAAACTTC
GCTTTTTTAA ATTAA
|
|---|
| Protein sequence | MLDLLPDLFD HYPSKLTLLP LDFRSFGGKR LFWGEVVTVK CFEDNSKVKE VLAQPGHGKV
LVVDGGSSSR RALLGDLIAQ SALDNGWQGV VINGYVRDAA RLSTFNLGVY ALGAMPIKTE
KLNQGQIDVP IEFGTVVIKP GMMLYADENG IAVSEESLNF AFLN
|
|---|
| |