292 homologs were found in PanDaTox collection
for query gene Bphyt_2492 on replicon NC_010681
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010681  Bphyt_2492  ribonuclease activity regulator protein RraA  100 
 
 
164 aa  326  8e-89  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000420166  hitchhiker  0.0053907 
 
 
-
 
NC_007951  Bxe_A1645  ribonuclease activity regulator protein RraA  92.07 
 
 
164 aa  303  1.0000000000000001e-81  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.002756  normal  0.0229312 
 
 
-
 
NC_010622  Bphy_1374  ribonuclease activity regulator protein RraA  76.07 
 
 
164 aa  252  1.0000000000000001e-66  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000213066  normal 
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  65.24 
 
 
164 aa  218  3.9999999999999997e-56  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  62.58 
 
 
165 aa  214  2.9999999999999998e-55  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1229  ribonuclease activity regulator protein RraA  64.6 
 
 
165 aa  214  5e-55  Ralstonia pickettii 12J  Bacteria  normal  0.698827  normal  0.761807 
 
 
-
 
NC_012856  Rpic12D_1292  ribonuclease activity regulator protein RraA  64.6 
 
 
165 aa  214  5.9999999999999996e-55  Ralstonia pickettii 12D  Bacteria  normal  0.0683145  normal  0.12691 
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  65.03 
 
 
165 aa  213  9.999999999999999e-55  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_007973  Rmet_1382  ribonuclease activity regulator protein RraA  62.8 
 
 
170 aa  211  2.9999999999999995e-54  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.521864 
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  63.19 
 
 
165 aa  210  7e-54  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_003295  RSc1354  ribonuclease activity regulator protein RraA  62.2 
 
 
168 aa  202  1e-51  Ralstonia solanacearum GMI1000  Bacteria  normal  0.498794  normal 
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  52.76 
 
 
163 aa  179  2e-44  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1445  ribonuclease activity regulator protein RraA  55.56 
 
 
168 aa  175  3e-43  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_2403  ribonuclease activity regulator protein RraA  54.94 
 
 
168 aa  173  9.999999999999999e-43  Acidovorax sp. JS42  Bacteria  normal  0.330498  normal 
 
 
-
 
NC_008825  Mpe_A1561  ribonuclease activity regulator protein RraA  54.43 
 
 
168 aa  167  8e-41  Methylibium petroleiphilum PM1  Bacteria  normal  0.220477  normal 
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  50.31 
 
 
161 aa  165  2e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  50.92 
 
 
159 aa  164  5.9999999999999996e-40  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_007908  Rfer_1955  ribonuclease activity regulator protein RraA  50.59 
 
 
173 aa  163  1.0000000000000001e-39  Rhodoferax ferrireducens T118  Bacteria  normal  0.30554  n/a   
 
 
-
 
NC_008781  Pnap_2372  ribonuclease activity regulator protein RraA  50.31 
 
 
170 aa  161  3e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.693976  normal 
 
 
-
 
NC_010524  Lcho_2009  ribonuclease activity regulator protein RraA  53.46 
 
 
167 aa  160  6e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00664884 
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  48.45 
 
 
163 aa  156  1e-37  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  45.12 
 
 
162 aa  155  3e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  48.77 
 
 
163 aa  155  3e-37  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  45.12 
 
 
162 aa  154  4e-37  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  48.15 
 
 
163 aa  153  8e-37  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_013757  Gobs_3615  regulator of ribonuclease activity A  52.5 
 
 
164 aa  153  9e-37  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.507491  n/a   
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  48.15 
 
 
163 aa  153  1e-36  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  48.45 
 
 
163 aa  153  1e-36  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  43.83 
 
 
163 aa  152  2e-36  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  45.73 
 
 
162 aa  152  2e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  45.73 
 
 
162 aa  152  2e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0585  regulator of ribonuclease activity A  49.06 
 
 
163 aa  151  4e-36  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.444909  normal  0.73105 
 
 
-
 
NC_002977  MCA1813  ribonuclease activity regulator protein RraA  47.85 
 
 
161 aa  150  1e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  0.208296  n/a   
 
 
-
 
NC_008025  Dgeo_0386  ribonuclease activity regulator protein RraA  50.96 
 
 
167 aa  149  2e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  43.9 
 
 
162 aa  148  3e-35  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  50.97 
 
 
161 aa  147  5e-35  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  45.73 
 
 
175 aa  146  1.0000000000000001e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  44.51 
 
 
169 aa  145  3e-34  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  43.29 
 
 
162 aa  144  4.0000000000000006e-34  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  46.91 
 
 
163 aa  142  3e-33  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  42.68 
 
 
166 aa  141  5e-33  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  46.63 
 
 
159 aa  139  9.999999999999999e-33  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  42.68 
 
 
171 aa  139  9.999999999999999e-33  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009357  OSTLU_8571  predicted protein  50 
 
 
136 aa  139  9.999999999999999e-33  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal  0.0694704 
 
 
-
 
NC_011772  BCG9842_B1909  ribonuclease activity regulator protein RraA  43.83 
 
 
159 aa  138  3e-32  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3327  ribonuclease activity regulator protein RraA  43.83 
 
 
159 aa  138  3.9999999999999997e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  43.4 
 
 
165 aa  137  4.999999999999999e-32  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3321  ribonuclease activity regulator protein RraA  43.83 
 
 
159 aa  137  4.999999999999999e-32  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  46.01 
 
 
159 aa  137  6e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0465  ribonuclease activity regulator protein RraA  48.17 
 
 
164 aa  137  8.999999999999999e-32  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  41.51 
 
 
159 aa  136  1e-31  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_3341  ribonuclease activity regulator protein RraA  42.59 
 
 
159 aa  135  3.0000000000000003e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A3341  ribonuclease activity regulator protein RraA  42.59 
 
 
159 aa  135  3.0000000000000003e-31  Bacillus cereus AH187  Bacteria  normal  0.0125864  n/a   
 
 
-
 
NC_005945  BAS3122  ribonuclease activity regulator protein RraA  42.59 
 
 
159 aa  135  3.0000000000000003e-31  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000000380178  n/a   
 
 
-
 
NC_006274  BCZK3012  ribonuclease activity regulator protein RraA  42.24 
 
 
159 aa  135  3.0000000000000003e-31  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000537886  n/a   
 
 
-
 
NC_013411  GYMC61_2622  ribonuclease activity regulator protein RraA  45.06 
 
 
161 aa  135  3.0000000000000003e-31  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007530  GBAA_3368  ribonuclease activity regulator protein RraA  42.59 
 
 
159 aa  135  3.0000000000000003e-31  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  42.41 
 
 
165 aa  135  3.0000000000000003e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_005957  BT9727_3109  ribonuclease activity regulator protein RraA  42.59 
 
 
159 aa  134  7.000000000000001e-31  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  46.2 
 
 
164 aa  133  9.999999999999999e-31  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3047  ribonuclease activity regulator protein RraA  41.98 
 
 
159 aa  132  3e-30  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0699347  n/a   
 
 
-
 
NC_009052  Sbal_1992  ribonuclease activity regulator protein RraA  45.57 
 
 
164 aa  132  3e-30  Shewanella baltica OS155  Bacteria  normal  0.816132  n/a   
 
 
-
 
NC_013456  VEA_004459  ribonuclease E inhibitor RraA  39.63 
 
 
160 aa  132  3e-30  Vibrio sp. Ex25  Bacteria  normal  0.0150677  n/a   
 
 
-
 
NC_008345  Sfri_2210  ribonuclease activity regulator protein RraA  43.67 
 
 
164 aa  131  3.9999999999999996e-30  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  45.57 
 
 
164 aa  131  3.9999999999999996e-30  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
NC_013235  Namu_0271  regulator of ribonuclease activity A  45 
 
 
157 aa  131  5e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  40.24 
 
 
162 aa  131  5e-30  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_012793  GWCH70_1543  ribonuclease activity regulator protein RraA  44.72 
 
 
161 aa  130  6e-30  Geobacillus sp. WCH70  Bacteria  unclonable  0.00000000000209525  n/a   
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  40.24 
 
 
160 aa  130  6.999999999999999e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013159  Svir_20270  RraA family protein  47.17 
 
 
155 aa  130  1.0000000000000001e-29  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_008146  Mmcs_5056  ribonuclease activity regulator protein RraA  44.59 
 
 
159 aa  129  1.0000000000000001e-29  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5144  ribonuclease activity regulator protein RraA  44.59 
 
 
159 aa  129  1.0000000000000001e-29  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3296  ribonuclease activity regulator protein RraA  41.46 
 
 
170 aa  130  1.0000000000000001e-29  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.234724 
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I2557  ribonuclease activity regulator protein RraA  39.49 
 
 
158 aa  129  2.0000000000000002e-29  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2492  regulator of ribonuclease activity A  43.4 
 
 
170 aa  128  4.0000000000000003e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2332  ribonuclease activity regulator protein RraA  44.94 
 
 
164 aa  127  6e-29  Shewanella baltica OS223  Bacteria  hitchhiker  0.00982975  hitchhiker  0.00847233 
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  43.56 
 
 
159 aa  127  6e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  127  9.000000000000001e-29  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  127  9.000000000000001e-29  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_009092  Shew_2117  ribonuclease activity regulator protein RraA  43.29 
 
 
164 aa  127  9.000000000000001e-29  Shewanella loihica PV-4  Bacteria  normal  0.86066  normal 
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  127  9.000000000000001e-29  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  127  9.000000000000001e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  40.85 
 
 
161 aa  126  1.0000000000000001e-28  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  39.02 
 
 
161 aa  126  1.0000000000000001e-28  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  126  1.0000000000000001e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_5435  ribonuclease activity regulator protein RraA  43.31 
 
 
159 aa  126  1.0000000000000001e-28  Mycobacterium sp. JLS  Bacteria  normal  0.89586  normal  0.892268 
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  40.85 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  39.49 
 
 
161 aa  125  2.0000000000000002e-28  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  40.85 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  40.85 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  39.63 
 
 
161 aa  125  2.0000000000000002e-28  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  40.85 
 
 
161 aa  125  2.0000000000000002e-28  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  40.85 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
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