More than 300 homologs were found in PanDaTox collection
for query gene Krad_2492 on replicon NC_009664
Organism: Kineococcus radiotolerans SRS30216



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009664  Krad_2492  regulator of ribonuclease activity A  100 
 
 
170 aa  345  2e-94  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0271  regulator of ribonuclease activity A  66.23 
 
 
157 aa  214  2.9999999999999998e-55  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_5435  ribonuclease activity regulator protein RraA  64.05 
 
 
159 aa  202  1e-51  Mycobacterium sp. JLS  Bacteria  normal  0.89586  normal  0.892268 
 
 
-
 
NC_008146  Mmcs_5056  ribonuclease activity regulator protein RraA  64.05 
 
 
159 aa  201  3e-51  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_5144  ribonuclease activity regulator protein RraA  64.05 
 
 
159 aa  201  3e-51  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  66.89 
 
 
159 aa  200  8e-51  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  65.79 
 
 
163 aa  200  8e-51  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_014158  Tpau_0114  regulator of ribonuclease activity A  61.69 
 
 
163 aa  198  1.9999999999999998e-50  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.344528  n/a   
 
 
-
 
NC_013159  Svir_20270  RraA family protein  63.64 
 
 
155 aa  197  5e-50  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_009338  Mflv_1124  ribonuclease activity regulator protein RraA  62.03 
 
 
160 aa  197  5e-50  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.22942  normal 
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  66.23 
 
 
162 aa  197  7.999999999999999e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  64.71 
 
 
159 aa  197  7.999999999999999e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_13889  ribonuclease activity regulator protein RraA  62.67 
 
 
157 aa  196  1.0000000000000001e-49  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  64.24 
 
 
159 aa  195  2.0000000000000003e-49  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5682  ribonuclease activity regulator protein RraA  60.49 
 
 
160 aa  194  5.000000000000001e-49  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  hitchhiker  0.00219714 
 
 
-
 
NC_008541  Arth_3997  ribonuclease activity regulator protein RraA  57.83 
 
 
176 aa  186  1e-46  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0136  regulator of ribonuclease activity A  56 
 
 
166 aa  186  1e-46  Gordonia bronchialis DSM 43247  Bacteria  normal  0.657064  n/a   
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  55.06 
 
 
161 aa  174  6e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_011886  Achl_3776  ribonuclease activity regulator protein RraA  57.67 
 
 
161 aa  171  2.9999999999999996e-42  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  47.4 
 
 
162 aa  157  6e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  46.41 
 
 
162 aa  155  2e-37  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  48.39 
 
 
163 aa  155  2e-37  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  46.1 
 
 
163 aa  155  2e-37  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  46.1 
 
 
162 aa  155  3e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  46.41 
 
 
162 aa  153  1e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  45.1 
 
 
162 aa  151  5e-36  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_008577  Shewana3_2373  ribonuclease activity regulator protein RraA  50.34 
 
 
164 aa  151  5e-36  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00367036  normal  0.0338555 
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  45.1 
 
 
162 aa  150  5.9999999999999996e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  44.37 
 
 
159 aa  150  1e-35  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_008025  Dgeo_0386  ribonuclease activity regulator protein RraA  49.69 
 
 
167 aa  149  1e-35  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1888  ribonuclease activity regulator protein RraA  48.3 
 
 
164 aa  147  7e-35  Shewanella amazonensis SB2B  Bacteria  normal  0.059217  normal 
 
 
-
 
NC_008321  Shewmr4_2165  ribonuclease activity regulator protein RraA  48.3 
 
 
164 aa  147  9e-35  Shewanella sp. MR-4  Bacteria  normal  0.0632667  normal  0.880589 
 
 
-
 
NC_008322  Shewmr7_2242  ribonuclease activity regulator protein RraA  48.3 
 
 
164 aa  147  9e-35  Shewanella sp. MR-7  Bacteria  normal  0.132469  normal  0.489263 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  45.45 
 
 
163 aa  146  1.0000000000000001e-34  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  49.66 
 
 
161 aa  146  1.0000000000000001e-34  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  45.45 
 
 
163 aa  146  1.0000000000000001e-34  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  45.75 
 
 
163 aa  146  2.0000000000000003e-34  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_010506  Swoo_2615  ribonuclease activity regulator protein RraA  46.26 
 
 
164 aa  146  2.0000000000000003e-34  Shewanella woodyi ATCC 51908  Bacteria  normal  0.78337  normal  0.362905 
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  48.37 
 
 
166 aa  145  2.0000000000000003e-34  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  46.31 
 
 
162 aa  145  3e-34  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  44.81 
 
 
163 aa  144  5e-34  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  46.75 
 
 
163 aa  144  8.000000000000001e-34  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_012793  GWCH70_1543  ribonuclease activity regulator protein RraA  47.02 
 
 
161 aa  143  9e-34  Geobacillus sp. WCH70  Bacteria  unclonable  0.00000000000209525  n/a   
 
 
-
 
NC_004347  SO_2567  ribonuclease activity regulator protein RraA  45.58 
 
 
164 aa  143  1e-33  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2117  ribonuclease activity regulator protein RraA  48.3 
 
 
164 aa  142  2e-33  Shewanella loihica PV-4  Bacteria  normal  0.86066  normal 
 
 
-
 
NC_009052  Sbal_1992  ribonuclease activity regulator protein RraA  46.94 
 
 
164 aa  142  2e-33  Shewanella baltica OS155  Bacteria  normal  0.816132  n/a   
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  46.94 
 
 
164 aa  142  3e-33  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
NC_013411  GYMC61_2622  ribonuclease activity regulator protein RraA  47.02 
 
 
161 aa  141  3e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  46.94 
 
 
164 aa  142  3e-33  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_008345  Sfri_2210  ribonuclease activity regulator protein RraA  44.9 
 
 
164 aa  141  4e-33  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  43.79 
 
 
161 aa  140  6e-33  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2332  ribonuclease activity regulator protein RraA  46.94 
 
 
164 aa  140  6e-33  Shewanella baltica OS223  Bacteria  hitchhiker  0.00982975  hitchhiker  0.00847233 
 
 
-
 
NC_003910  CPS_0538  ribonuclease activity regulator protein RraA  41.5 
 
 
163 aa  140  8e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  42.48 
 
 
161 aa  140  9e-33  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  140  9.999999999999999e-33  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_3549  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  139  9.999999999999999e-33  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00109264  normal 
 
 
-
 
NC_008322  Shewmr7_0407  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  139  9.999999999999999e-33  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000143495  normal 
 
 
-
 
NC_008577  Shewana3_3723  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  139  9.999999999999999e-33  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00679648  normal 
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  42.48 
 
 
159 aa  139  9.999999999999999e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1984  ribonuclease activity regulator protein RraA  43.62 
 
 
164 aa  140  9.999999999999999e-33  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0137329  normal  0.331323 
 
 
-
 
NC_009438  Sputcn32_1772  ribonuclease activity regulator protein RraA  44.22 
 
 
164 aa  139  1.9999999999999998e-32  Shewanella putrefaciens CN-32  Bacteria  normal  0.0420602  n/a   
 
 
-
 
NC_008700  Sama_3200  ribonuclease activity regulator protein RraA  42.48 
 
 
161 aa  139  1.9999999999999998e-32  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  138  3e-32  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  138  3e-32  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  138  3e-32  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  41.18 
 
 
161 aa  138  3e-32  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  40.52 
 
 
161 aa  138  3.9999999999999997e-32  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004459  ribonuclease E inhibitor RraA  40.94 
 
 
160 aa  135  2e-31  Vibrio sp. Ex25  Bacteria  normal  0.0150677  n/a   
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  136  2e-31  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3370  ribonuclease activity regulator protein RraA  40.52 
 
 
161 aa  135  2e-31  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  136  2e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  45.51 
 
 
164 aa  135  2e-31  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  136  2e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  44.22 
 
 
165 aa  135  3.0000000000000003e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  38.56 
 
 
161 aa  135  3.0000000000000003e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I2557  ribonuclease activity regulator protein RraA  40.82 
 
 
158 aa  135  4e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  42.57 
 
 
160 aa  134  6.0000000000000005e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  42.11 
 
 
165 aa  134  8e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4094  ribonuclease activity regulator protein RraA  39.22 
 
 
161 aa  132  1.9999999999999998e-30  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  132  1.9999999999999998e-30  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1665  ribonuclease activity regulator protein RraA  42.42 
 
 
177 aa  132  3e-30  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0814823 
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  40.79 
 
 
161 aa  131  3.9999999999999996e-30  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  39.87 
 
 
175 aa  131  3.9999999999999996e-30  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  40.79 
 
 
161 aa  131  5e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  44.23 
 
 
165 aa  130  6e-30  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_009524  PsycPRwf_1638  ribonuclease activity regulator protein RraA  46.97 
 
 
175 aa  131  6e-30  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.000156979  normal  0.0371486 
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009357  OSTLU_8571  predicted protein  45.04 
 
 
136 aa  130  6e-30  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal  0.0694704 
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  130  6e-30  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  39.87 
 
 
169 aa  130  7.999999999999999e-30  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_007204  Psyc_1485  ribonuclease activity regulator protein RraA  41.67 
 
 
177 aa  130  9e-30  Psychrobacter arcticus 273-4  Bacteria  normal  0.108799  normal  0.282904 
 
 
-
 
NC_010506  Swoo_0530  ribonuclease activity regulator protein RraA  37.91 
 
 
161 aa  129  1.0000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  130  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  130  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  130  1.0000000000000001e-29  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
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