More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2294 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  100 
 
 
162 aa  331  2e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  87.04 
 
 
162 aa  303  4.0000000000000004e-82  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  84.47 
 
 
163 aa  293  5e-79  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  83.85 
 
 
163 aa  289  1e-77  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  84.47 
 
 
163 aa  289  1e-77  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  82.1 
 
 
162 aa  289  1e-77  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  83.85 
 
 
163 aa  287  4e-77  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  83.85 
 
 
163 aa  286  6e-77  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  81.48 
 
 
162 aa  286  8e-77  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  80.12 
 
 
162 aa  282  2.0000000000000002e-75  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  79.01 
 
 
162 aa  280  8.000000000000001e-75  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  69.03 
 
 
159 aa  228  2e-59  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  64.33 
 
 
163 aa  211  3.9999999999999995e-54  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  60 
 
 
161 aa  203  7e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  201  3e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  58.75 
 
 
161 aa  201  4e-51  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  58.13 
 
 
169 aa  200  6e-51  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  198  3e-50  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  198  3e-50  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  198  3e-50  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  59.51 
 
 
163 aa  198  3e-50  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  56.25 
 
 
175 aa  198  3e-50  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  198  3e-50  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_008321  Shewmr4_3549  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3e-50  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00109264  normal 
 
 
-
 
NC_008322  Shewmr7_0407  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3e-50  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000143495  normal 
 
 
-
 
NC_008577  Shewana3_3723  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  198  3e-50  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00679648  normal 
 
 
-
 
NC_009831  Ssed_4094  ribonuclease activity regulator protein RraA  58.13 
 
 
161 aa  198  3e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3370  ribonuclease activity regulator protein RraA  57.5 
 
 
161 aa  198  3e-50  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  197  3.9999999999999996e-50  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  55.7 
 
 
159 aa  195  2.0000000000000003e-49  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_010506  Swoo_0530  ribonuclease activity regulator protein RraA  55 
 
 
161 aa  193  1e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3200  ribonuclease activity regulator protein RraA  54.37 
 
 
161 aa  192  1e-48  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  55.97 
 
 
171 aa  191  4e-48  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  58.13 
 
 
161 aa  191  5e-48  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  58.13 
 
 
161 aa  191  5e-48  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  58.13 
 
 
161 aa  191  5e-48  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03814  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4335  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0948467  n/a   
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_4371  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.520292 
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03763  hypothetical protein  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4421  ribonuclease activity regulator protein RraA  56.25 
 
 
161 aa  188  2.9999999999999997e-47  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  56.49 
 
 
165 aa  188  2.9999999999999997e-47  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4161  ribonuclease activity regulator protein RraA  56.88 
 
 
161 aa  188  2.9999999999999997e-47  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  55 
 
 
161 aa  187  4e-47  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009436  Ent638_4044  ribonuclease activity regulator protein RraA  55.62 
 
 
161 aa  187  5e-47  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3296  ribonuclease activity regulator protein RraA  54.09 
 
 
170 aa  187  5.999999999999999e-47  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.234724 
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  55 
 
 
166 aa  185  3e-46  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  51.55 
 
 
161 aa  183  1.0000000000000001e-45  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1638  ribonuclease activity regulator protein RraA  55.09 
 
 
175 aa  182  1.0000000000000001e-45  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.000156979  normal  0.0371486 
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  53.75 
 
 
161 aa  182  1.0000000000000001e-45  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  53.12 
 
 
161 aa  182  2.0000000000000003e-45  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  53.02 
 
 
161 aa  181  3e-45  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_007969  Pcryo_1665  ribonuclease activity regulator protein RraA  54.49 
 
 
177 aa  179  2e-44  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0814823 
 
 
-
 
NC_012912  Dd1591_0111  ribonuclease activity regulator protein RraA  54.04 
 
 
161 aa  178  2.9999999999999997e-44  Dickeya zeae Ech1591  Bacteria  normal  0.530064  n/a   
 
 
-
 
NC_007204  Psyc_1485  ribonuclease activity regulator protein RraA  53.89 
 
 
177 aa  177  4.999999999999999e-44  Psychrobacter arcticus 273-4  Bacteria  normal  0.108799  normal  0.282904 
 
 
-
 
NC_013757  Gobs_3615  regulator of ribonuclease activity A  57.79 
 
 
164 aa  175  2e-43  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.507491  n/a   
 
 
-
 
NC_003910  CPS_4374  ribonuclease activity regulator protein RraA  50 
 
 
165 aa  174  4e-43  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00210  ribonuclease activity regulator protein RraA  53.12 
 
 
161 aa  174  4e-43  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  47.53 
 
 
166 aa  174  5e-43  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_012880  Dd703_3800  ribonuclease activity regulator protein RraA  55.28 
 
 
161 aa  174  6e-43  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4070  ribonuclease activity regulator protein RraA  51.27 
 
 
161 aa  173  8e-43  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  51.27 
 
 
161 aa  173  8e-43  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_010622  Bphy_1374  ribonuclease activity regulator protein RraA  49.08 
 
 
164 aa  169  2e-41  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000213066  normal 
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  49.39 
 
 
164 aa  168  3e-41  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  50.31 
 
 
162 aa  167  4e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  50 
 
 
162 aa  165  2e-40  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  47.47 
 
 
159 aa  165  2.9999999999999998e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  48.1 
 
 
159 aa  164  2.9999999999999998e-40  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  50.92 
 
 
165 aa  165  2.9999999999999998e-40  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  49.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  49.69 
 
 
163 aa  161  4.0000000000000004e-39  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_007954  Sden_2025  ribonuclease activity regulator protein RraA  50 
 
 
177 aa  161  4.0000000000000004e-39  Shewanella denitrificans OS217  Bacteria  normal  0.111815  n/a   
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  47.47 
 
 
159 aa  160  5.0000000000000005e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004459  ribonuclease E inhibitor RraA  48.1 
 
 
160 aa  160  7e-39  Vibrio sp. Ex25  Bacteria  normal  0.0150677  n/a   
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  47.47 
 
 
160 aa  160  7e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  51.88 
 
 
164 aa  160  8.000000000000001e-39  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  51.88 
 
 
164 aa  160  8.000000000000001e-39  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_009052  Sbal_1992  ribonuclease activity regulator protein RraA  51.88 
 
 
164 aa  160  8.000000000000001e-39  Shewanella baltica OS155  Bacteria  normal  0.816132  n/a   
 
 
-
 
NC_009438  Sputcn32_1772  ribonuclease activity regulator protein RraA  50.32 
 
 
164 aa  159  1e-38  Shewanella putrefaciens CN-32  Bacteria  normal  0.0420602  n/a   
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  48.47 
 
 
165 aa  159  2e-38  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_0585  regulator of ribonuclease activity A  50 
 
 
163 aa  159  2e-38  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.444909  normal  0.73105 
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  46.88 
 
 
165 aa  159  2e-38  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_008577  Shewana3_2373  ribonuclease activity regulator protein RraA  50.32 
 
 
164 aa  158  3e-38  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00367036  normal  0.0338555 
 
 
-
 
NC_009664  Krad_2492  regulator of ribonuclease activity A  47.4 
 
 
170 aa  157  6e-38  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_20270  RraA family protein  50 
 
 
155 aa  157  7e-38  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
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