| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_2025 |
|---|
| Symbol | |
|---|
| ID | 4018517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 2401638 |
|---|
| End bp | 2402171 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637956050 |
|---|
| Product | ribonuclease activity regulator protein RraA |
|---|
| Protein accession | YP_563031 |
|---|
| Protein GI | 91793380 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
|---|
| TIGRFAM ID | [TIGR01935] RraA famliy |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.111815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAG TTTCCACACC TTCTTCAATA AACTCAATGA TATTCGGCCC TGAGGTTGAT
GATTTATTGC CCGATTTGTT TGATTCATAT GCTGATAAAT TACAATTAGT TAATGAAACA
TGGTGCAACT ATGGCGGCAG GACTATTTTT GCTGGTGAAG TGGTGACCGT CAGTTGTTTT
GAGGATAACT CTAAGGTTAA GGCGCAATTA GCCCTGCCAG GTGTGGGTAA GGTGTTGGTT
GTACATGGGC AAGGCTCATT TGCCAAAGCC TTGCTTGGTG ACATGATTGC GAAAAGTGCC
TTGGATAATG GCTGGGAGGG GATCGTCATT TATGGTTGTA TCCGCGATGC TGGCGCCATT
GCCAAAATGC CAATAGGGGT TAAAGCCCTA GGTGTGACTC CAATTAAGAC CCAAAAGCGC
GACTTAGGCG AACTCAATGT GACCCTAGAA ATCGGCCAAG TGTCGATAAA ACCTGGAATG
ATGCTGTATG CTGACTTAAA TGGCATCGCC ATTAGTGAGT CCGTGCTGTC CTGA
|
|---|
| Protein sequence | MAQVSTPSSI NSMIFGPEVD DLLPDLFDSY ADKLQLVNET WCNYGGRTIF AGEVVTVSCF
EDNSKVKAQL ALPGVGKVLV VHGQGSFAKA LLGDMIAKSA LDNGWEGIVI YGCIRDAGAI
AKMPIGVKAL GVTPIKTQKR DLGELNVTLE IGQVSIKPGM MLYADLNGIA ISESVLS
|
|---|
| |