| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4094 |
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| Symbol | |
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| ID | 5610612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5010117 |
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| End bp | 5010602 |
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| Gene Length | 486 bp |
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| Protein Length | 161 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935049 |
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| Product | ribonuclease activity regulator protein RraA |
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| Protein accession | YP_001475826 |
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| Protein GI | 157377226 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
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| TIGRFAM ID | [TIGR01935] RraA famliy
[TIGR02998] regulator of ribonuclease activity A |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATACA ACACCTCAGA ACTTTGTGAC ACTTACATCG ATGTGGTTGA TGTTGTCGAA
CCTATGTTCA GCAATTATGG TGGTTGTAAC TCTTTTGGTG GCTCAATTAG CACGATTAAA
TGCTTCGAAG ATAACGGTCT TATTGCAGAA GCACTGCAGC AAGACGGTGA AGGCAAGGTT
TTACTCGTCG ATGGCGGCGG CTCTCTGAGA CGTGCCCTGC TCGATGCCTC TATCGCTCAG
TTAGCTGTGG ATAATAAGTG GGAAGGCATT ATCATCTATG GTTCGGTCAG AGATGTAGAT
GCACTGGAAG ATCTCGATAT CGGCATTCAG GCTCTGGCCT CGATTCCAGT TGGCGCCGAT
GAAAACTCTG TCGGTGAGCT GGAGATCCCG GTCAACTTTG GTGGTGTTAC CTTCTTGCCT
CTCGATCATG TCTATGCTGA TAACACAGGT ATCATCCTCT CTCCAGAACC GTTAGACATG
GAGTAA
|
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| Protein sequence | MEYNTSELCD TYIDVVDVVE PMFSNYGGCN SFGGSISTIK CFEDNGLIAE ALQQDGEGKV
LLVDGGGSLR RALLDASIAQ LAVDNKWEGI IIYGSVRDVD ALEDLDIGIQ ALASIPVGAD
ENSVGELEIP VNFGGVTFLP LDHVYADNTG IILSPEPLDM E
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