Gene Shew_3370 details

Gene Information

• Locus tag: Shew_3370
• ID: 4924213
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella loihica PV-4
• Kingdom: Bacteria
• Replicon accession: NC_009092
• Strand: +
• Start bp: 4018911
• End bp: 4019396
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640164982
• Product: ribonuclease activity regulator protein RraA
• Protein accession: YP_001095495
• Protein GI: 127514298
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0684] Demethylmenaquinone methyltransferase
• TIGRFAM ID: [TIGR01935] RraA famliy; [TIGR02998] regulator of ribonuclease activity A

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGAATACA ACACCTCAGA ACTTTGTGAC ACTTACATTG ATGTGGTCGA TGTTGTTGAA 
CCCATGTTCA GTAATTACGG TGGTTGTAGC TCTTTCGGCG GTTCAATTAG CACCATTAAA 
TGCTTCGAAG ACAATGGATT AATCGCTGAG GTTCTGCAAC AGGATGGCGA AGGCAAAGTA 
CTGCTGGTCG ACGGTGGCGG ATCTCTGCGC CGCGCTCTGG TCGACGCCAA CATCGCCGAG 
ATCGCCGTGG CAAACAACTG GGAAGGCATT ATCGTTTATG GTTCGGTGCG CGATGTCGAC 
GCACTGGAAG ATCTGGACAT TGGCATCCAG GCCCTGGCCT CTATCCCTGT GGGCGCAGAC 
GGCCACGGCG TGGGCGAACT GGAGATCCCG GTTAACTTCG GCGGCGTCAC CTTCCTGCCA 
GCCGACCATA TCTACGCCGA CAACACAGGC ATCATCCTGT CACCCGAGCC TCTAGATATC 
GATTAA 

 

Protein sequence

MEYNTSELCD TYIDVVDVVE PMFSNYGGCS SFGGSISTIK CFEDNGLIAE VLQQDGEGKV 
LLVDGGGSLR RALVDANIAE IAVANNWEGI IVYGSVRDVD ALEDLDIGIQ ALASIPVGAD 
GHGVGELEIP VNFGGVTFLP ADHIYADNTG IILSPEPLDI D