Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3549 |
Symbol | |
ID | 4254114 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4239321 |
End bp | 4239806 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638120186 |
Product | ribonuclease activity regulator protein RraA |
Protein accession | YP_735671 |
Protein GI | 113971878 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0684] Demethylmenaquinone methyltransferase |
TIGRFAM ID | [TIGR01935] RraA famliy [TIGR02998] regulator of ribonuclease activity A |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00109264 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATACA ACACCTCAGA ACTATGTGAC ATGTACTTAG ATGTCGTAGA TGTAGTCGAG CCCATGTTCA GTAACTACGG TGGTTGTAGC TCTTTTGGCG GTTCTATCAG CACGATTAAG TGCTTTGAAG ACAACGGCCT AATCACCGAG GTCTTACAAG AAGATGGCCA AGGTAAAGTC TTACTGGTTG ACGGTGGTGG CTCATTACGC CGCGCCCTGA TCGATGCTTC TATCGCTGAA ATCGCAGTCA ACAACAACTG GGAAGGCATT ATCGTTTACG GTTCAGTACG CGATGTGGAT GCGCTGGAAG AATTAGACAT CGGCATTCAA GCCCTTGCCT CGATTCCAGT AGGTGCCGAT GGCAATTCAG TGGGCGAAGT GGAAATTCCG GTCAACTTTG GCGGCGTGAC CTTCCTCCCA GGCGATCATA TCTATGCCGA TAACACTGGC ATTATCCTGT CGCCAGAGCC ACTCGACATT GAGTAA
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Protein sequence | MEYNTSELCD MYLDVVDVVE PMFSNYGGCS SFGGSISTIK CFEDNGLITE VLQEDGQGKV LLVDGGGSLR RALIDASIAE IAVNNNWEGI IVYGSVRDVD ALEELDIGIQ ALASIPVGAD GNSVGEVEIP VNFGGVTFLP GDHIYADNTG IILSPEPLDI E
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