Gene Shewmr4_3549 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3549 
Symbol 
ID4254114 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4239321 
End bp4239806 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content49% 
IMG OID638120186 
Productribonuclease activity regulator protein RraA 
Protein accessionYP_735671 
Protein GI113971878 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID[TIGR01935] RraA famliy
[TIGR02998] regulator of ribonuclease activity A 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00109264 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATACA ACACCTCAGA ACTATGTGAC ATGTACTTAG ATGTCGTAGA TGTAGTCGAG 
CCCATGTTCA GTAACTACGG TGGTTGTAGC TCTTTTGGCG GTTCTATCAG CACGATTAAG
TGCTTTGAAG ACAACGGCCT AATCACCGAG GTCTTACAAG AAGATGGCCA AGGTAAAGTC
TTACTGGTTG ACGGTGGTGG CTCATTACGC CGCGCCCTGA TCGATGCTTC TATCGCTGAA
ATCGCAGTCA ACAACAACTG GGAAGGCATT ATCGTTTACG GTTCAGTACG CGATGTGGAT
GCGCTGGAAG AATTAGACAT CGGCATTCAA GCCCTTGCCT CGATTCCAGT AGGTGCCGAT
GGCAATTCAG TGGGCGAAGT GGAAATTCCG GTCAACTTTG GCGGCGTGAC CTTCCTCCCA
GGCGATCATA TCTATGCCGA TAACACTGGC ATTATCCTGT CGCCAGAGCC ACTCGACATT
GAGTAA
 
Protein sequence
MEYNTSELCD MYLDVVDVVE PMFSNYGGCS SFGGSISTIK CFEDNGLITE VLQEDGQGKV 
LLVDGGGSLR RALIDASIAE IAVNNNWEGI IVYGSVRDVD ALEELDIGIQ ALASIPVGAD
GNSVGEVEIP VNFGGVTFLP GDHIYADNTG IILSPEPLDI E