| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2373 |
|---|
| Symbol | |
|---|
| ID | 4479608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2852548 |
|---|
| End bp | 2853042 |
|---|
| Gene Length | 495 bp |
|---|
| Protein Length | 164 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639726970 |
|---|
| Product | ribonuclease activity regulator protein RraA |
|---|
| Protein accession | YP_870008 |
|---|
| Protein GI | 117920816 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0684] Demethylmenaquinone methyltransferase |
|---|
| TIGRFAM ID | [TIGR01935] RraA famliy |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00367036 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0338555 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGATC TATTGCCTGA TTTGTTCGAT CACTACCCTA CAAAACTGTC GCTGTTACCG
CTCGATTTTC GCAGTTTTGG TGGTAAGCGT CTGTTTTGGG GTGAAGTTGT GACGGTCAAA
TGTTTTGAAG ATAACTCCAA AGTGAAAGAA GTGCTGGCCC AGCCCGGTCA TGGAAAAGTA
TTGGTCGTCG ATGGTGGCGG TTCACCCCGG CGGGCGTTAC TTGGGGATTT GATCGCGCAA
AGTGCCCTCG ATAACGGTTG GCAAGGTGTG GTGATTAATG GCTATGTCCG TGATGTGGCA
AGGCTTTCCA CTTTTAATCT CGGCGTCTAT GCCCTAGGGG CTATGCCGAT CAAGACCGAA
AAATTAAACC AAGGTCACAT CGATGTGCCG ATTGAGTTTG GCGCTGTGAC AGTAAAACCC
GGCATGATGC TTTATGCCGA TGAGAATGGT ATTGCCGTGA GCGAGGCATC ATTAAACTTT
GCCTTTCTAA GTTAA
|
|---|
| Protein sequence | MLDLLPDLFD HYPTKLSLLP LDFRSFGGKR LFWGEVVTVK CFEDNSKVKE VLAQPGHGKV
LVVDGGGSPR RALLGDLIAQ SALDNGWQGV VINGYVRDVA RLSTFNLGVY ALGAMPIKTE
KLNQGHIDVP IEFGAVTVKP GMMLYADENG IAVSEASLNF AFLS
|
|---|
| |