291 homologs were found in PanDaTox collection
for query gene Gobs_3615 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_3615  regulator of ribonuclease activity A  100 
 
 
164 aa  326  9e-89  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.507491  n/a   
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  57.79 
 
 
162 aa  175  2e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  54.55 
 
 
163 aa  172  1.9999999999999998e-42  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  54.84 
 
 
162 aa  171  2.9999999999999996e-42  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  56.77 
 
 
162 aa  170  5.999999999999999e-42  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  55.84 
 
 
163 aa  170  7.999999999999999e-42  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  54.14 
 
 
163 aa  166  1e-40  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  56.21 
 
 
162 aa  166  1e-40  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  56.13 
 
 
162 aa  166  2e-40  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  55.48 
 
 
162 aa  165  2e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  54.97 
 
 
161 aa  165  2.9999999999999998e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  57.69 
 
 
165 aa  164  5.9999999999999996e-40  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  54.14 
 
 
163 aa  163  9e-40  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  54.9 
 
 
163 aa  162  1.0000000000000001e-39  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  54.55 
 
 
163 aa  163  1.0000000000000001e-39  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  54 
 
 
159 aa  162  2.0000000000000002e-39  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  55.77 
 
 
164 aa  160  5.0000000000000005e-39  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_007973  Rmet_1382  ribonuclease activity regulator protein RraA  53.5 
 
 
170 aa  160  9e-39  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.521864 
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  53.55 
 
 
165 aa  159  1e-38  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  56.25 
 
 
165 aa  159  1e-38  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_009719  Plav_0585  regulator of ribonuclease activity A  55.97 
 
 
163 aa  159  1e-38  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.444909  normal  0.73105 
 
 
-
 
NC_008781  Pnap_2372  ribonuclease activity regulator protein RraA  52.73 
 
 
170 aa  158  3e-38  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.693976  normal 
 
 
-
 
NC_010682  Rpic_1229  ribonuclease activity regulator protein RraA  53.55 
 
 
165 aa  157  4e-38  Ralstonia pickettii 12J  Bacteria  normal  0.698827  normal  0.761807 
 
 
-
 
NC_007951  Bxe_A1645  ribonuclease activity regulator protein RraA  53.75 
 
 
164 aa  157  4e-38  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.002756  normal  0.0229312 
 
 
-
 
NC_008825  Mpe_A1561  ribonuclease activity regulator protein RraA  51.81 
 
 
168 aa  157  5e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.220477  normal 
 
 
-
 
NC_012856  Rpic12D_1292  ribonuclease activity regulator protein RraA  53.55 
 
 
165 aa  157  5e-38  Ralstonia pickettii 12D  Bacteria  normal  0.0683145  normal  0.12691 
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  54.19 
 
 
161 aa  156  9e-38  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  51.33 
 
 
159 aa  155  3e-37  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0386  ribonuclease activity regulator protein RraA  51.97 
 
 
167 aa  154  5.0000000000000005e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2492  ribonuclease activity regulator protein RraA  52.5 
 
 
164 aa  153  9e-37  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000420166  hitchhiker  0.0053907 
 
 
-
 
NC_010524  Lcho_2009  ribonuclease activity regulator protein RraA  54.14 
 
 
167 aa  153  1e-36  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00664884 
 
 
-
 
NC_008782  Ajs_2403  ribonuclease activity regulator protein RraA  54.19 
 
 
168 aa  153  1e-36  Acidovorax sp. JS42  Bacteria  normal  0.330498  normal 
 
 
-
 
NC_011992  Dtpsy_1445  ribonuclease activity regulator protein RraA  54.19 
 
 
168 aa  152  2e-36  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  49.68 
 
 
163 aa  149  1e-35  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1374  ribonuclease activity regulator protein RraA  52.2 
 
 
164 aa  149  1e-35  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000213066  normal 
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  49.67 
 
 
166 aa  148  3e-35  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1354  ribonuclease activity regulator protein RraA  54.6 
 
 
168 aa  146  1.0000000000000001e-34  Ralstonia solanacearum GMI1000  Bacteria  normal  0.498794  normal 
 
 
-
 
NC_002977  MCA1813  ribonuclease activity regulator protein RraA  50.97 
 
 
161 aa  145  3e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  0.208296  n/a   
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  50.33 
 
 
163 aa  142  2e-33  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  49.67 
 
 
159 aa  142  2e-33  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_009524  PsycPRwf_1638  ribonuclease activity regulator protein RraA  46.84 
 
 
175 aa  140  9e-33  Psychrobacter sp. PRwf-1  Bacteria  hitchhiker  0.000156979  normal  0.0371486 
 
 
-
 
NC_007969  Pcryo_1665  ribonuclease activity regulator protein RraA  46.2 
 
 
177 aa  140  9e-33  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.0814823 
 
 
-
 
NC_007908  Rfer_1955  ribonuclease activity regulator protein RraA  49.08 
 
 
173 aa  137  7.999999999999999e-32  Rhodoferax ferrireducens T118  Bacteria  normal  0.30554  n/a   
 
 
-
 
NC_007204  Psyc_1485  ribonuclease activity regulator protein RraA  43.04 
 
 
177 aa  136  2e-31  Psychrobacter arcticus 273-4  Bacteria  normal  0.108799  normal  0.282904 
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  48.67 
 
 
162 aa  135  3.0000000000000003e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009357  OSTLU_8571  predicted protein  52.27 
 
 
136 aa  134  4e-31  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal  0.0694704 
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  44.44 
 
 
175 aa  134  4e-31  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013159  Svir_20270  RraA family protein  47.4 
 
 
155 aa  134  8e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  43.79 
 
 
169 aa  133  9.999999999999999e-31  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  46.36 
 
 
159 aa  133  9.999999999999999e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  42.67 
 
 
165 aa  133  9.999999999999999e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  46.1 
 
 
159 aa  132  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  49.01 
 
 
161 aa  132  3e-30  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  49.01 
 
 
161 aa  132  3e-30  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  49.01 
 
 
161 aa  132  3e-30  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0465  ribonuclease activity regulator protein RraA  51.3 
 
 
164 aa  129  1.0000000000000001e-29  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1543  ribonuclease activity regulator protein RraA  46.05 
 
 
161 aa  129  2.0000000000000002e-29  Geobacillus sp. WCH70  Bacteria  unclonable  0.00000000000209525  n/a   
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  43.42 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  44 
 
 
166 aa  129  2.0000000000000002e-29  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  43.42 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  129  2.0000000000000002e-29  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  43.42 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  43.42 
 
 
161 aa  129  2.0000000000000002e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  128  3e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  44.08 
 
 
161 aa  128  4.0000000000000003e-29  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  43.71 
 
 
171 aa  128  4.0000000000000003e-29  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  46.36 
 
 
161 aa  127  7.000000000000001e-29  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_013411  GYMC61_2622  ribonuclease activity regulator protein RraA  48.03 
 
 
161 aa  127  7.000000000000001e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  47.02 
 
 
161 aa  127  7.000000000000001e-29  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3549  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  127  7.000000000000001e-29  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00109264  normal 
 
 
-
 
NC_008322  Shewmr7_0407  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  127  7.000000000000001e-29  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000143495  normal 
 
 
-
 
NC_008577  Shewana3_3723  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  127  7.000000000000001e-29  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00679648  normal 
 
 
-
 
NC_013235  Namu_0271  regulator of ribonuclease activity A  42.68 
 
 
157 aa  127  7.000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  42.95 
 
 
161 aa  127  8.000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  44.08 
 
 
161 aa  126  1.0000000000000001e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3370  ribonuclease activity regulator protein RraA  42.76 
 
 
161 aa  126  1.0000000000000001e-28  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03814  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_009800  EcHS_A4161  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03763  hypothetical protein  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4371  ribonuclease activity regulator protein RraA  46.67 
 
 
161 aa  125  2.0000000000000002e-28  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.520292 
 
 
-
 
NC_009436  Ent638_4044  ribonuclease activity regulator protein RraA  44.67 
 
 
161 aa  124  4.0000000000000003e-28  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  42.11 
 
 
161 aa  124  4.0000000000000003e-28  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  45.33 
 
 
161 aa  123  9e-28  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  45.33 
 
 
161 aa  123  9e-28  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  45.33 
 
 
161 aa  123  9e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4421  ribonuclease activity regulator protein RraA  45.33 
 
 
161 aa  123  9e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B4335  ribonuclease activity regulator protein RraA  45.33 
 
 
161 aa  123  9e-28  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0948467  n/a   
 
 
-
 
NC_010506  Swoo_0530  ribonuclease activity regulator protein RraA  41.45 
 
 
161 aa  123  1e-27  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
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