Gene Sfri_0477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0477 
Symbol 
ID4278541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp543476 
End bp543961 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content44% 
IMG OID638133235 
Productribonuclease activity regulator protein RraA 
Protein accessionYP_749177 
Protein GI114561664 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID[TIGR01935] RraA famliy
[TIGR02998] regulator of ribonuclease activity A 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATACA ACACCTCAGA ACTCTGCGAC ATGTATATAG ATGTAGTCGA TGTCGTCGAA 
CCAATGTTCA GTAACTACGG TGGTTGCAGC TCCTTCGGTG GCTCAATCAG TACAATTAAG 
TGTTTTGAAG ATAATGGTCT GATTGCTGAT GCTTTAGAAG AAGACGGTGA AGGTAAAGTA 
CTATTGGTCG ATGGTGGTGG ATCGTTAAGA CGTGCCCTAC TCGATGCTAG AATTGCTGAA 
ATTGCTGTAG CCAACAATTG GGAAGGTATC CTCATTTACG GTTCAGTACG TGACGTTGAC 
GCTCTTGAAG AACTTGATAT TGGTATCCAG GCGCTTGCTT CGATTCCTGT CGGTGCTGAA 
AGTAACGGTG TGGGCGAAGT CGAAATTCCA GTTAATTTTG GTGGCGTGAC CTTCTTACCG 
GGTGACCATA TCTATGCTGA TAACACTGGC GTTATTCTGT CTCCAGAACC ATTAGATATT 
GAATAA
 
Protein sequence
MEYNTSELCD MYIDVVDVVE PMFSNYGGCS SFGGSISTIK CFEDNGLIAD ALEEDGEGKV 
LLVDGGGSLR RALLDARIAE IAVANNWEGI LIYGSVRDVD ALEELDIGIQ ALASIPVGAE 
SNGVGEVEIP VNFGGVTFLP GDHIYADNTG VILSPEPLDI E