251 homologs were found in PanDaTox collection
for query gene VEA_001751 on replicon NC_013456
Organism: Vibrio sp. Ex25



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013456  VEA_001751  ribonuclease E inhibitor RraA  100 
 
 
169 aa  335  9.999999999999999e-92  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00131194  n/a   
 
 
-
 
NC_009783  VIBHAR_00721  ribonuclease activity regulator protein RraA  93.75 
 
 
175 aa  310  6.999999999999999e-84  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009457  VC0395_A2245  ribonuclease activity regulator protein RraA  86.16 
 
 
171 aa  285  2.9999999999999996e-76  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3370  ribonuclease activity regulator protein RraA  73.29 
 
 
161 aa  249  2e-65  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0530  ribonuclease activity regulator protein RraA  72.05 
 
 
161 aa  244  3e-64  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0292  ribonuclease activity regulator protein RraA  74.03 
 
 
165 aa  243  6.999999999999999e-64  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0463  ribonuclease activity regulator protein RraA  70.81 
 
 
161 aa  243  9.999999999999999e-64  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3200  ribonuclease activity regulator protein RraA  72.67 
 
 
161 aa  242  9.999999999999999e-64  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3790  ribonuclease activity regulator protein RraA  70.81 
 
 
161 aa  242  1.9999999999999999e-63  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3549  ribonuclease activity regulator protein RraA  71.43 
 
 
161 aa  242  1.9999999999999999e-63  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00109264  normal 
 
 
-
 
NC_008322  Shewmr7_0407  ribonuclease activity regulator protein RraA  71.43 
 
 
161 aa  242  1.9999999999999999e-63  Shewanella sp. MR-7  Bacteria  decreased coverage  0.000143495  normal 
 
 
-
 
NC_008577  Shewana3_3723  ribonuclease activity regulator protein RraA  71.43 
 
 
161 aa  242  1.9999999999999999e-63  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00679648  normal 
 
 
-
 
NC_008345  Sfri_0477  ribonuclease activity regulator protein RraA  70.19 
 
 
161 aa  241  3e-63  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4094  ribonuclease activity regulator protein RraA  69.57 
 
 
161 aa  240  5e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4197  ribonuclease activity regulator protein RraA  70.19 
 
 
161 aa  239  1e-62  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_0508  ribonuclease activity regulator protein RraA  70.19 
 
 
161 aa  239  1e-62  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_4070  ribonuclease activity regulator protein RraA  68.94 
 
 
161 aa  239  2e-62  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0433  ribonuclease activity regulator protein RraA  69.57 
 
 
161 aa  239  2e-62  Shewanella baltica OS195  Bacteria  normal  0.0304727  hitchhiker  0.000428302 
 
 
-
 
NC_009665  Shew185_0421  ribonuclease activity regulator protein RraA  69.57 
 
 
161 aa  239  2e-62  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3893  ribonuclease activity regulator protein RraA  69.57 
 
 
161 aa  239  2e-62  Shewanella baltica OS155  Bacteria  normal  0.0137999  n/a   
 
 
-
 
NC_011663  Sbal223_0447  ribonuclease activity regulator protein RraA  69.57 
 
 
161 aa  239  2e-62  Shewanella baltica OS223  Bacteria  normal  0.944116  normal 
 
 
-
 
NC_009832  Spro_4795  ribonuclease activity regulator protein RraA  67.08 
 
 
161 aa  234  5.0000000000000005e-61  Serratia proteamaculans 568  Bacteria  normal  decreased coverage  0.0000170987 
 
 
-
 
NC_013421  Pecwa_0177  ribonuclease activity regulator protein RraA  66.46 
 
 
161 aa  232  2.0000000000000002e-60  Pectobacterium wasabiae WPP163  Bacteria  normal  0.607774  n/a   
 
 
-
 
NC_009436  Ent638_4044  ribonuclease activity regulator protein RraA  67.08 
 
 
161 aa  232  2.0000000000000002e-60  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0163  ribonuclease activity regulator protein RraA  65.84 
 
 
161 aa  231  3e-60  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_3296  ribonuclease activity regulator protein RraA  68.55 
 
 
170 aa  231  3e-60  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.234724 
 
 
-
 
NC_011149  SeAg_B4335  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  6e-60  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0948467  n/a   
 
 
-
 
NC_011094  SeSA_A4305  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  6e-60  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4489  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  6e-60  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A4419  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  6e-60  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4421  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  6e-60  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03814  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_4056  regulator of ribonuclease activity A  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5386  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4411  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Shigella boydii CDC 3083-94  Bacteria  normal  0.081305  n/a   
 
 
-
 
NC_012892  B21_03763  hypothetical protein  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A4161  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4371  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.520292 
 
 
-
 
NC_010468  EcolC_4089  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_4464  ribonuclease activity regulator protein RraA  65.22 
 
 
161 aa  230  7.000000000000001e-60  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0220  ribonuclease activity regulator protein RraA  65.22 
 
 
166 aa  228  3e-59  Haemophilus somnus 129PT  Bacteria  hitchhiker  0.0000505209  n/a   
 
 
-
 
NC_010465  YPK_4106  ribonuclease activity regulator protein RraA  63.98 
 
 
161 aa  227  6e-59  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_0110  ribonuclease activity regulator protein RraA  63.98 
 
 
161 aa  227  6e-59  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0110  ribonuclease activity regulator protein RraA  63.98 
 
 
161 aa  227  6e-59  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_00210  ribonuclease activity regulator protein RraA  62.73 
 
 
161 aa  222  2e-57  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0111  ribonuclease activity regulator protein RraA  62.73 
 
 
161 aa  211  2.9999999999999995e-54  Dickeya zeae Ech1591  Bacteria  normal  0.530064  n/a   
 
 
-
 
NC_012880  Dd703_3800  ribonuclease activity regulator protein RraA  62.73 
 
 
161 aa  211  3.9999999999999995e-54  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4374  ribonuclease activity regulator protein RraA  61.25 
 
 
165 aa  207  7e-53  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_23290  ribonuclease activity regulator protein RraA  57.5 
 
 
162 aa  202  2e-51  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2294  dimethylmenaquinone methyltransferase family protein  58.13 
 
 
162 aa  201  5e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0136666  n/a   
 
 
-
 
NC_008463  PA14_41640  ribonuclease activity regulator protein RraA  57.5 
 
 
162 aa  199  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3534  ribonuclease activity regulator protein RraA  57.5 
 
 
162 aa  199  1.9999999999999998e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.433731  n/a   
 
 
-
 
NC_007005  Psyr_2092  ribonuclease activity regulator protein RraA  57.5 
 
 
162 aa  197  6e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.763155  hitchhiker  0.00360273 
 
 
-
 
NC_002947  PP_2084  ribonuclease activity regulator protein RraA  57.23 
 
 
163 aa  197  7.999999999999999e-50  Pseudomonas putida KT2440  Bacteria  normal  0.0147593  normal  0.0154234 
 
 
-
 
NC_009512  Pput_3656  ribonuclease activity regulator protein RraA  57.23 
 
 
163 aa  196  1.0000000000000001e-49  Pseudomonas putida F1  Bacteria  normal  0.055385  normal  0.888026 
 
 
-
 
NC_010322  PputGB1_1595  ribonuclease activity regulator protein RraA  57.23 
 
 
163 aa  195  3e-49  Pseudomonas putida GB-1  Bacteria  normal  0.462955  normal  0.0410006 
 
 
-
 
NC_009439  Pmen_2087  ribonuclease activity regulator protein RraA  56.25 
 
 
162 aa  193  8.000000000000001e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.188373  normal  0.130481 
 
 
-
 
NC_010501  PputW619_1602  ribonuclease activity regulator protein RraA  57.23 
 
 
163 aa  192  1e-48  Pseudomonas putida W619  Bacteria  normal  0.730491  hitchhiker  0.000000000811326 
 
 
-
 
NC_007492  Pfl01_1772  ribonuclease activity regulator protein RraA  56.6 
 
 
163 aa  191  3e-48  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000823097  normal 
 
 
-
 
NC_011662  Tmz1t_1248  ribonuclease activity regulator protein RraA  48.1 
 
 
159 aa  169  1e-41  Thauera sp. MZ1T  Bacteria  normal  0.728506  n/a   
 
 
-
 
NC_007298  Daro_3096  ribonuclease activity regulator protein RraA  46.91 
 
 
163 aa  163  8e-40  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1882  ribonuclease activity regulator protein RraA  48.7 
 
 
159 aa  162  1.0000000000000001e-39  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1172  ribonuclease activity regulator protein RraA  46.2 
 
 
161 aa  159  1e-38  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.837665  normal  0.121951 
 
 
-
 
NC_010717  PXO_04832  ribonuclease activity regulator protein RraA  44.1 
 
 
166 aa  155  2e-37  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1593  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia mallei ATCC 23344  Bacteria  normal  0.11137  n/a   
 
 
-
 
NC_007434  BURPS1710b_2618  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0127005  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2095  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia mallei SAVP1  Bacteria  hitchhiker  0.00000569604  n/a   
 
 
-
 
NC_008836  BMA10229_A3218  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia mallei NCTC 10229  Bacteria  hitchhiker  0.00155848  n/a   
 
 
-
 
NC_009074  BURPS668_2477  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia pseudomallei 668  Bacteria  hitchhiker  0.000110984  n/a   
 
 
-
 
NC_009076  BURPS1106A_2531  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_1368  ribonuclease activity regulator protein RraA  47.24 
 
 
165 aa  155  3e-37  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0226901  n/a   
 
 
-
 
NC_010622  Bphy_1374  ribonuclease activity regulator protein RraA  46.01 
 
 
164 aa  152  2e-36  Burkholderia phymatum STM815  Bacteria  hitchhiker  0.000213066  normal 
 
 
-
 
NC_007963  Csal_2060  ribonuclease activity regulator protein RraA  47.77 
 
 
163 aa  151  5e-36  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.163212  n/a   
 
 
-
 
NC_010084  Bmul_1223  ribonuclease activity regulator protein RraA  44.51 
 
 
164 aa  150  5.9999999999999996e-36  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.108874  normal  0.104257 
 
 
-
 
NC_007651  BTH_I1992  ribonuclease activity regulator protein RraA  46.63 
 
 
165 aa  149  2e-35  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000162446  n/a   
 
 
-
 
NC_011312  VSAL_I2557  ribonuclease activity regulator protein RraA  44.37 
 
 
158 aa  149  3e-35  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA1813  ribonuclease activity regulator protein RraA  45.62 
 
 
161 aa  146  1.0000000000000001e-34  Methylococcus capsulatus str. Bath  Bacteria  normal  0.208296  n/a   
 
 
-
 
NC_013510  Tcur_1137  regulator of ribonuclease activity A  44.94 
 
 
159 aa  146  1.0000000000000001e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00936  ribonuclease activity regulator protein RraA  41.67 
 
 
160 aa  145  2.0000000000000003e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010681  Bphyt_2492  ribonuclease activity regulator protein RraA  44.51 
 
 
164 aa  145  4.0000000000000006e-34  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.0000420166  hitchhiker  0.0053907 
 
 
-
 
NC_014165  Tbis_1638  regulator of ribonuclease activity A  44.94 
 
 
159 aa  144  5e-34  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.626899 
 
 
-
 
NC_013595  Sros_8444  regulator of ribonuclease activity A  45.57 
 
 
159 aa  144  6e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2009  ribonuclease activity regulator protein RraA  42.68 
 
 
167 aa  144  8.000000000000001e-34  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00664884 
 
 
-
 
NC_009654  Mmwyl1_2071  regulator of ribonuclease activity A  39.87 
 
 
161 aa  143  1e-33  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1645  ribonuclease activity regulator protein RraA  43.9 
 
 
164 aa  142  2e-33  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.002756  normal  0.0229312 
 
 
-
 
NC_013456  VEA_004459  ribonuclease E inhibitor RraA  40 
 
 
160 aa  141  4e-33  Vibrio sp. Ex25  Bacteria  normal  0.0150677  n/a   
 
 
-
 
NC_008825  Mpe_A1561  ribonuclease activity regulator protein RraA  42.24 
 
 
168 aa  141  4e-33  Methylibium petroleiphilum PM1  Bacteria  normal  0.220477  normal 
 
 
-
 
NC_007347  Reut_A1963  ribonuclease activity regulator protein RraA  44.17 
 
 
165 aa  141  5e-33  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1888  ribonuclease activity regulator protein RraA  45.1 
 
 
164 aa  141  5e-33  Shewanella amazonensis SB2B  Bacteria  normal  0.059217  normal 
 
 
-
 
NC_009457  VC0395_A1944  ribonuclease activity regulator protein RraA  40.38 
 
 
162 aa  140  7e-33  Vibrio cholerae O395  Bacteria  hitchhiker  0.000472167  n/a   
 
 
-
 
NC_012856  Rpic12D_1292  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  140  9e-33  Ralstonia pickettii 12D  Bacteria  normal  0.0683145  normal  0.12691 
 
 
-
 
NC_013159  Svir_20270  RraA family protein  45.7 
 
 
155 aa  140  9e-33  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.295098  normal 
 
 
-
 
NC_007333  Tfu_2727  ribonuclease activity regulator protein RraA  45.57 
 
 
163 aa  140  9.999999999999999e-33  Thermobifida fusca YX  Bacteria  normal  0.608878  n/a   
 
 
-
 
NC_010682  Rpic_1229  ribonuclease activity regulator protein RraA  44.87 
 
 
165 aa  140  9.999999999999999e-33  Ralstonia pickettii 12J  Bacteria  normal  0.698827  normal  0.761807 
 
 
-
 
NC_009901  Spea_2410  regulator of ribonuclease activity A  41.94 
 
 
165 aa  139  9.999999999999999e-33  Shewanella pealeana ATCC 700345  Bacteria  normal  0.300312  n/a   
 
 
-
 
NC_009665  Shew185_2007  ribonuclease activity regulator protein RraA  45.1 
 
 
164 aa  138  3.9999999999999997e-32  Shewanella baltica OS185  Bacteria  normal  0.151067  n/a   
 
 
-
 
NC_008781  Pnap_2372  ribonuclease activity regulator protein RraA  40.74 
 
 
170 aa  138  3.9999999999999997e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.693976  normal 
 
 
-
 
NC_011901  Tgr7_2551  ribonuclease activity regulator protein RraA  40.94 
 
 
161 aa  137  4.999999999999999e-32  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.0143021  n/a   
 
 
-
 
NC_014210  Ndas_4363  regulator of ribonuclease activity A  40.25 
 
 
162 aa  137  7.999999999999999e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2055  ribonuclease activity regulator protein RraA  44.44 
 
 
164 aa  136  1e-31  Shewanella baltica OS195  Bacteria  normal  0.215493  hitchhiker  0.000558094 
 
 
-
 
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