Gene Patl_4070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4070 
Symbol 
ID4175859 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand- 
Start bp4894456 
End bp4894941 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content48% 
IMG OID638057106 
Productribonuclease activity regulator protein RraA 
Protein accessionYP_663623 
Protein GI109900368 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0684] Demethylmenaquinone methyltransferase 
TIGRFAM ID[TIGR01935] RraA famliy
[TIGR02998] regulator of ribonuclease activity A 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATATA ATACGTCTGC ATTATGTGAT TTATTTGCTG ACAGTGTTGA TGTGGTAGAA 
CCCATGTTTG TTAGCTTTGG TGGCCGCGCT TCTTTTGGAG GTGAAATTAC CACCATCAAA 
TGTTTCGAAG ACAAAGGCGT TATTCTCAAA GCGCTGGAAA AGCCTGGGCT AGGAAAAGTA 
TTGCTAATCG ACGGCGGTGG CTCTATGCGC CGAGCGTTAA TAGATTCTGC CGCAGCGCAA 
ATCGCTTTAG ATAACGGCTG GGAAGGTATT ATTTGTTATG GCAGTGTGCG CGAGGTCGAT 
GATTTAGAAG AGATCAACGT GGGTGTGCAT GCTATCGCCT CGATACCGGT CAGTGCTGAC 
GACCAAGGCG TGGGTGAAGT TGATGTTGCG GTGAATTTTG GTGGCGTGAC GTTTCTGCCA 
GAAGATCATG TGTATGCCGA CCGCACAGGG ATTATTCTCT CCCCTGAACC TTTAGACGTC 
GAGTAA
 
Protein sequence
MEYNTSALCD LFADSVDVVE PMFVSFGGRA SFGGEITTIK CFEDKGVILK ALEKPGLGKV 
LLIDGGGSMR RALIDSAAAQ IALDNGWEGI ICYGSVREVD DLEEINVGVH AIASIPVSAD 
DQGVGEVDVA VNFGGVTFLP EDHVYADRTG IILSPEPLDV E